Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) AT1G67390 75 / 2e-14 F-box family protein (.1) AT5G44960 71 / 5e-13 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G51370 70 / 5e-13 F-box/RNI-like/FBD-like domains-containing protein (.1.2.3) AT5G56370 68 / 4e-12 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT5G44940 67 / 8e-12 F-box/RNI-like superfamily protein (.1) AT1G78750 67 / 9e-12 F-box/RNI-like superfamily protein (.1) AT5G56420 66 / 2e-11 F-box/RNI-like/FBD-like domains-containing protein (.1.2) AT3G58880 63 / 2e-10 F-box/RNI-like superfamily protein (.1) AT4G15060 62 / 3e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G134200 [exp] 235 / 6e-73 AT1G13570 526 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.014G039700 [exp] 234 / 2e-72 AT1G13570 265 / 7e-85 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 222 / 9e-68 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1) Potri.008G110400 [exp] 169 / 1e-47 AT1G13570 419 / 2e-144 F-box/RNI-like superfamily protein (.1) Potri.004G034500 [exp] 72 / 2e-13 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.015G002100 [exp] 71 / 3e-13 AT4G03220 103 / 5e-24 Protein with RNI-like/FBD-like domains (.1) Potri.011G121500 [exp] 71 / 4e-13 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.014G163866 [exp] 66 / 1e-11 AT4G14103 79 / 2e-16 F-box/RNI-like superfamily protein (.1.2) Potri.011G098700 [exp] 66 / 2e-11 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019144 [exp] 211 / 1e-63 AT1G13570 482 / 6e-170 F-box/RNI-like superfamily protein (.1) Lus10034414 [exp] 205 / 3e-61 AT1G13570 475 / 5e-167 F-box/RNI-like superfamily protein (.1) Lus10034415 [exp] 163 / 8e-47 AT1G13570 358 / 1e-123 F-box/RNI-like superfamily protein (.1) Lus10030569 [exp] 151 / 8e-41 AT1G13570 183 / 5e-53 F-box/RNI-like superfamily protein (.1) Lus10030920 [exp] 147 / 2e-39 AT1G13570 179 / 1e-51 F-box/RNI-like superfamily protein (.1) Lus10041818 [exp] 136 / 2e-35 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10040760 [exp] 128 / 1e-32 AT1G13570 157 / 3e-43 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 119 / 3e-29 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 118 / 4e-29 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10034418 [exp] 104 / 1e-23 AT1G13570 148 / 1e-38 F-box/RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.017G107600.5 pacid=42812993 polypeptide=Potri.017G107600.5.p locus=Potri.017G107600 ID=Potri.017G107600.5.v4.1 annot-version=v4.1 ATGTTAAATTTAGCTGAAGAACTTACAAAAAAGATAATGAAGAAACATGAGAATCTTGCTGAGACGGAAAAGCAACTAGAGATTGATAGGATCAGCAATC TGCCGTGGGATGTATTGGATACTATCCTTGTGTGCTTGCCTCTTAGAGATGCTGCAAGGACTAGTATCCTATCCAGTAAGTGGAGATATAAGTGGACTAA TCTTTCACAGTTCATTTTGGATGATAAATGCATCCACTATTCTATATCAGACAAAACATCCAGATGGATAGAGATTAGGAAAATCATCGATCATGTTCAA TCCAATCACAATGGACCAATAGAGAAGTTCAAGCTTGCGGCTTATTGCTGTCCAAACTATTCCGATTTAGACCAATGGATAAGGTTTTTAACAGAGAAAG GTATCAAGGAGTTAATTATCCAGGAGTTCAGTGTCATTAAGCATTTTAAGCTGCCTGATTCTGTTTTCTGCGGTCCAAAACTCAGTCACTTGGAGCTATA TGGTTGCATATTAAGGCTTCCTTCATCATTCAAAGGATTTGATTGCCTTAAAATCCTTCAGCTCAATCATGTTTTCATAAAAAGCGATACACTGGAACAT TTAATCCGTAACTGCCCTGTTCTTGAGAAGCTAACACTGTTGAACCTTCATCATCTGGCTTGCGTAAGGATATATAACCCAAACCTGAAATATGTGAAAA TAGATTCTGCATTTGAAGATATCTGTCTGGGACATAGCTTGCTTCTAGCCAGTGTTGATATTCGTATGTTACCTATGAATGGGGGGATCACACACCAACC TCCCGAACAAGGGAAAGTTTGCACTTTAATCAGAGTTTTTGGTTATCTGCATGGTATAAACAGGCTAAGCTTATCCAATCAATTTCTTGAGTTTCTTGCC AATAAAGATGTGCCAGAAAGACTCCCTACTCCATTCAACAGCCTCTTGGCCCTTGAACTAAAAGAAATAAGATTTGCTAGTTTAAAAGGCATAGCGGCTT CCATTTCTATACTCAGAAGCTCCCCAAATTTGGAAGATCTTCTTGTTACTGTTTACCCATGTGATGATATTTCCAATCCTGTCATGGATTTGGTGACAGC ACAGCTCCAGAGTGACTTTTATTTTAACCAACTCAAAGTGGTGAAGATCCGAGGCATTAATGGCACAAGAATCGAGTGGGAATTTCTCAGACTCATACTT GCTCATTCACCGGTGCTCGAGTCAATGACTATTGTAAAATCCAAAGGTGAGAGAATTTCTGAATCATTCTTGCAGGAAGTTGAGCGAGCTTCAAAACATG TCAAGTTTATTAGTTTAGCTCCATAA
AA sequence Show only first row Show all	>Potri.017G107600.5 pacid=42812993 polypeptide=Potri.017G107600.5.p locus=Potri.017G107600 ID=Potri.017G107600.5.v4.1 annot-version=v4.1 MLNLAEELTKKIMKKHENLAETEKQLEIDRISNLPWDVLDTILVCLPLRDAARTSILSSKWRYKWTNLSQFILDDKCIHYSISDKTSRWIEIRKIIDHVQ SNHNGPIEKFKLAAYCCPNYSDLDQWIRFLTEKGIKELIIQEFSVIKHFKLPDSVFCGPKLSHLELYGCILRLPSSFKGFDCLKILQLNHVFIKSDTLEH LIRNCPVLEKLTLLNLHHLACVRIYNPNLKYVKIDSAFEDICLGHSLLLASVDIRMLPMNGGITHQPPEQGKVCTLIRVFGYLHGINRLSLSNQFLEFLA NKDVPERLPTPFNSLLALELKEIRFASLKGIAASISILRSSPNLEDLLVTVYPCDDISNPVMDLVTAQLQSDFYFNQLKVVKIRGINGTRIEWEFLRLIL AHSPVLESMTIVKSKGERISESFLQEVERASKHVKFISLAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13570			F-box/RNI-like superfamily pro...		Potri.017G107600 [exp]	0	1
AT4G24110			unknown protein		Potri.001G082500 [exp]	8.00	0.6742
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	9.59	0.6921
AT4G25433			peptidoglycan-binding LysM dom...		Potri.012G135100 [exp]	18.27	0.6909
AT1G15740			Leucine-rich repeat family pro...		Potri.006G061700 [exp]	19.74	0.6817
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	19.97	0.6831
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.004G059200 [exp]	21.07	0.6595
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.003G183900 [exp]	29.66	0.6831
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Potri.005G158300 [exp]	31.12	0.6038
AT2G26850			F-box family protein (.1)		Potri.006G040000 [exp]	31.84	0.6573
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.004G105700 [exp]	32.12	0.6787

Compare expression of checked genes

Potri.017G107600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.