Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33390 100 / 9e-26 ATFAS4 FASCIATED STEM 4, RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201400 [exp] 148 / 9e-43 AT1G33390 1056 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025616 [exp] 119 / 3e-32 AT1G33390 1175 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1) Lus10028066 [exp] 117 / 2e-31 AT1G33390 1148 / 0.0 FASCIATED STEM 4, RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF07717 [poplar] [flax] OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence Show only first row Show all	>Potri.017G107900.1 pacid=42813246 polypeptide=Potri.017G107900.1.p locus=Potri.017G107900 ID=Potri.017G107900.1.v4.1 annot-version=v4.1 ATGGAAGGACATAGGAAAGCAAAGGCAGTTCGGTATCAAGCTTGCATGGTTGATGAAATTGTATTTCTCAACCGTCGGTCCTCTCTTTATCATGCAGCTC CTGAGTTTTTAGTGTACTCTGAATTGCTGCATACAAAATGGCCATACATTCATGGACCAAAAAGCGTGAAACCTGAATGGCTTGCCAATTATGGCGAGTC TTCGTGTGATTTTTCTGAAGTAGAACACCATAAACCTTTTTATCATCCTGAAACTGACCAAGCATTTCATGCGATTGTTCCATTTTTTACGCTTCATCTG TGGGAGCTTCTGCAATGTTATTTGCCATTTAAAAGGTGA
AA sequence Show only first row Show all	>Potri.017G107900.1 pacid=42813246 polypeptide=Potri.017G107900.1.p locus=Potri.017G107900 ID=Potri.017G107900.1.v4.1 annot-version=v4.1 MEGHRKAKAVRYQACMVDEIVFLNRRSSLYHAAPEFLVYSELLHTKWPYIHGPKSVKPEWLANYGESSCDFSEVEHHKPFYHPETDQAFHAIVPFFTLHL WELLQCYLPFKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Potri.017G107900 [exp]	0	1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014300 [exp]	17.60	0.7977
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	22.18	0.7944
AT5G09995			unknown protein		Potri.007G081800 [exp]	23.74	0.7771
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.008G052801 [exp]	29.24	0.7716
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Potri.001G412800 [exp]	37.34	0.7070
					Potri.014G022050 [exp]	42.07	0.7249
AT3G10870		ATMES17, MES17	ARABIDOPSIS THALIANA METHYL ES...		Potri.013G158200 [exp]	48.06	0.7622
AT1G17370		UBP1B	oligouridylate binding protein...		Potri.003G069000 [exp]	64.48	0.7148
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Potri.008G216400 [exp]	69.59	0.7462
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.012G080800 [exp]	70.71	0.7535

Compare expression of checked genes

Potri.017G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.