Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02490 605 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15980 570 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48250 286 / 8e-88 BIR6 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06400 83 / 3e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G37230 81 / 9e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 76 / 3e-14 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G60050 76 / 4e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G18390 74 / 1e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74750 73 / 3e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15980 72 / 7e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G108000 [exp] 1071 / 0 AT3G02490 623 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G084800 [exp] 326 / 1e-102 AT3G48250 715 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 91 / 5e-19 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 89 / 5e-18 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G077400 [exp] 84 / 1e-16 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 82 / 5e-16 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G102700 [exp] 80 / 2e-15 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G034200 [exp] 78 / 7e-15 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G180000 [exp] 78 / 8e-15 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032092 [exp] 694 / 0 AT3G02490 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019474 [exp] 333 / 2e-105 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043322 [exp] 330 / 5e-105 AT3G48250 660 / 0.0 Buthionine sulfoximine-insensitive roots 6, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011464 [exp] 84 / 1e-16 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021645 [exp] 81 / 1e-15 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 81 / 2e-15 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034721 [exp] 79 / 5e-15 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040633 [exp] 79 / 7e-15 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 79 / 7e-15 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003575 [exp] 77 / 1e-14 AT5G18390 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.017G108100.1 pacid=42813044 polypeptide=Potri.017G108100.1.p locus=Potri.017G108100 ID=Potri.017G108100.1.v4.1 annot-version=v4.1 ATGAGACACTCATGGAGGATTCTTCTCTACCGAAGCTACCCTCGGTCATCTCTCAAATTTTCCAATCATTTCCAGGTACTACAGCAACACTCTCCTCCTC CACTTCGCTCTCTGTCTTCTTCTCTTCACACACTTTCGCTGCAAGACTCTCATTTCTCTAAAACCCCACAAAAACCTAATATTTATAACAAAAACCCATT ATTTGCACGTAATTTATCATCTGAACCATCATTAGTTGAGCCCACAAAAGACCCAGATCTTGTTTTGCTAGTTTGTGATGTTTTTACCAAGTTTGAAGAT TCTGATGATATTAATAAAGAATTGGAATTGAGTAGTGTTGTTATTAGTCATGACTTGGTTTTGAAAGTTTTGAAGTCATTGGGATCGAAACCGGGTGTGG CTAAGAGGTTTTTTGATTGGGTTTTGAAGAAGGATAGTGAGAGATTGAGCTCTAAAAGTTATAACTGGATGTTAGGGATTTTGGGGGTAAATGGGTTGGT TGTGGAATTTTGGGAATTGGTTGATAAAATGAAGACAAAGGGTTATGGTGTGTCAGGGGTTACTCGAGATAGAGTGTTGGAGAAGTTTGAGAATGAAGGG TTAAAGGGTGATATAGAGAAATTAAAAGGGGTTTTTGCGACGGGATCCATTGATAATTCGGTGGAAAAGATTGGGTTGAGAATGAGTAGGATTGTTAGGA GTAAGTTTTGGGGAGAGGATGTTGAAGGGGAAATTAAGGGTTTGAGTGCTGAGTTTTCTAGTGGTTTGGTGAAGATTGTCTTGGAGCATTTAGCGATTGA GCCAATGAAAGCATTGATATTTTTTAGGTGGGTTGAGGAGAGTGAGTTGTGTAAGCATGATGGGGGGAGTTATAATGCCATGGCTAGGGTTTTGGGGAGC AAGGATTGTATTGACAGGTTTTGGAAGGTTATTGATGAAATGAGGAGTAACGGGTTTGAAATGGAGGTGGAGACATTTGATACAGTGTTGGCCTGGTTTA TGAGGAGGAAAATGATTAAGGAGGCTGTAGACTTATATGAGTTTGCAATGAATGGTGCAAATAAGCCCTCATCTAAATATTGCACCTATTTGTTGAGGAA CATAGTGGTTTGTAAACAGTTGGATATTGGTTTGTTTTCAAGAATTGTGAAGGTCTTTACTGAAAATGGGAATGTGTTGACAGATTCTATGCTTGATGCA GTTCTTAAAGCTCTAAGAAGTGTTGGTAGATTTAAAGAGTGCAATAAGATTTTAAGAGAAATGATGGTTGCTGGTTTTGTAGCTAGTGGTAATTTGCAGA GAAAGATTGCTTTTGGGCTTACTAGTGCTGGTAAGAATTATGAAGCAAGTGAATTTGTGGATCATATGGAATCATCTGGCAGCGATTTGGATTACAAGGC TTGGGCATCTTTAATTGAAGGACATTGTGTATCTGGGGATCTTGAAAAGGCATCTGATTGTTTCAAAACAATGGTTGAGAAAAAGGGAGTTACTGGTGCT GGTTATGCTGTTGAGTTGTTGGTAAATGCATATTGCCTCAAGAACAGAGCAGGAGATGCATGCAATCTTCTGTGTGATTATGTCTGTCAAAATCAGTTAC ACCCTTGGCGGACTACATACAAAGTATTGATAAGTAAGTTGCTAGCGCAGGGCGGATTTAAGGACTCCTTAAATCTGTTGGGGTTGATGCAAAGTCATGG AATTCCACCTTACATAGATCCATTTTTTGAGTTCGTATCAAAGTCTGGAACTGGAGATGATGCCATTGCTTTTATGAATGCTATGACCACTAAGAAGTTT CCATCTATATCTGTTTCTCTTCGTTTGTTTGAAGCCTTTTTCAATGCCAAACGGCATAGCGAAGCACAAGATTTCCTGTCTAAATGTCCAGTTTTCATTC GGAATCATGCTGATGTTTTGACTCTTTTCTGTTCCATGAAGTCTAGCAAAGATACTGCTGCTGCAACTGTATCTGTGTAG
AA sequence Show only first row Show all	>Potri.017G108100.1 pacid=42813044 polypeptide=Potri.017G108100.1.p locus=Potri.017G108100 ID=Potri.017G108100.1.v4.1 annot-version=v4.1 MRHSWRILLYRSYPRSSLKFSNHFQVLQQHSPPPLRSLSSSLHTLSLQDSHFSKTPQKPNIYNKNPLFARNLSSEPSLVEPTKDPDLVLLVCDVFTKFED SDDINKELELSSVVISHDLVLKVLKSLGSKPGVAKRFFDWVLKKDSERLSSKSYNWMLGILGVNGLVVEFWELVDKMKTKGYGVSGVTRDRVLEKFENEG LKGDIEKLKGVFATGSIDNSVEKIGLRMSRIVRSKFWGEDVEGEIKGLSAEFSSGLVKIVLEHLAIEPMKALIFFRWVEESELCKHDGGSYNAMARVLGS KDCIDRFWKVIDEMRSNGFEMEVETFDTVLAWFMRRKMIKEAVDLYEFAMNGANKPSSKYCTYLLRNIVVCKQLDIGLFSRIVKVFTENGNVLTDSMLDA VLKALRSVGRFKECNKILREMMVAGFVASGNLQRKIAFGLTSAGKNYEASEFVDHMESSGSDLDYKAWASLIEGHCVSGDLEKASDCFKTMVEKKGVTGA GYAVELLVNAYCLKNRAGDACNLLCDYVCQNQLHPWRTTYKVLISKLLAQGGFKDSLNLLGLMQSHGIPPYIDPFFEFVSKSGTGDDAIAFMNAMTTKKF PSISVSLRLFEAFFNAKRHSEAQDFLSKCPVFIRNHADVLTLFCSMKSSKDTAAATVSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02490			Pentatricopeptide repeat (PPR)...		Potri.017G108100 [exp]	0	1
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Potri.003G098800 [exp]	3.60	0.7868
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	5.47	0.7851
AT3G55340		PHIP1	phragmoplastin interacting pro...		Potri.010G209701 [exp]	6.92	0.7757
AT1G09320			agenet domain-containing prote...		Potri.005G011100 [exp]	10.00	0.7223
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Potri.014G104500 [exp]	10.09	0.7535
AT5G60960		PNM1	PPR protein localized to the n...		Potri.017G133400 [exp]	10.24	0.7475
AT5G38720			unknown protein		Potri.004G106900 [exp]	11.83	0.7612
AT4G01560		MEE49	maternal effect embryo arrest ...		Potri.002G182600 [exp]	12.00	0.7387
AT3G01160			unknown protein		Potri.005G108800 [exp]	12.04	0.7567
AT5G66540			unknown protein		Potri.015G078500 [exp]	15.71	0.7170

Compare expression of checked genes

Potri.017G108100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.