Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03340 1311 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G53230 1302 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 1280 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 439 / 3e-142 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 415 / 8e-136 CDC48B cell division cycle 48B (.1) AT1G03000 296 / 2e-87 PEX6 peroxin 6 (.1) AT3G56690 273 / 3e-78 CIP111 Cam interacting protein 111 (.1) AT5G08470 262 / 3e-74 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT3G05530 214 / 1e-61 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT5G58290 212 / 3e-61 RPT3 regulatory particle triple-A ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125500 [exp] 1332 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 1323 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 1311 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 1302 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 434 / 3e-140 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 418 / 1e-136 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 282 / 3e-82 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.001G174100 [exp] 275 / 9e-79 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 269 / 1e-76 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021441 [exp] 1300 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 1286 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 1280 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1269 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 1265 / 0 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 1195 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 759 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 448 / 1e-142 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10018033 [exp] 434 / 1e-142 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10002639 [exp] 450 / 8e-141 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [poplar] [flax] AcetylDC-like PF02359 [poplar] [flax] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [poplar] [flax] Cdc48_2-like PF02933 [poplar] [flax] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.017G108200.1 pacid=42812874 polypeptide=Potri.017G108200.1.p locus=Potri.017G108200 ID=Potri.017G108200.1.v4.1 annot-version=v4.1 ATGGGAGACCAGGCAGGCACAAACAAAAGAAAGAGAGATTTTAGTGATTCAATTATGGAGCGCAATAAGAAGACACCCAACAGGCTTCTTGTTGATGAAG CCATTAACGATGACAACTCTGTCATCACGCTCAATCCAGCTACAATGGAGCAACTTGATATTTTCCGCGGGGATAAATTGTTGATCAAGGGAAAGAAGAG GAGGGATACAGTTTGTATTGCCCTAGCTGATGATCGTTGCGATCAGCCCAAGATTCTGATGAATAAGGTTGTGAGGTCAAACTTAAGGGTCAGGCTTGGC GATATGGTTTCGGTGCAGCTATGTCATAACTTGCAGTATGGCAAGAGGGTTCACCTTCTGCCTTTGGATGACACAGTTGATGGCCTTAGCGGCAGTCTGT TTGGTGCCTACTTGAAGCCTTACTTTAAGGATTCTCATCGTCCTGTCAGGAAAGGAGATCTTTTCCTTGTCAGAGGAGGAATGAGGAGTGTGGAGTTTAA GGTCATTGAGACCGATCCTGCTGAGTACTGTGTGGTTGAGCCTGATACGGAGATCTTCTGTGAAGGGGAAGCTGTGAAGAGGGAAGATGAGGAAAGGCTT GATGGTGTTGGCTATGATGATCTTGGTGGCGTTAGGAAACAATTGGCACTAATCAGGGAGATGGTTGAACTGCCATTAAGGTTTCCACAACTTTTCAAGA CCATTGGTGTGAAGCCACCGAGAGGAATTCTGCTTTATGGTCCTCCTGGAACAGGTAAAACATTGATAGCAAGGGCTATTGCTAATGAAACTGGGGCTTT CTTCTTTTGTATCAATGGACCTGAAATCATGTCCAAGATGGCAGGAGAGAGTGAGCAAAATCTGAGAAAAGCTTTTGAAGAAGCTGAAAAGAATGCTCCT GCAATTGTATTTATTGATGAGATTGATTCAATTGCTCCCAAACGTGAGAAAACTGGTGGGGAAGTAGAGAGACGAATCGTTTCACAACTACTGACTCTTA TGGATGGGCTAAAGGCTCGTGCCCATGTTATTGTTATAGGAGCTACAAACAGGCCTAACAGTCTAGACCCTGCATTAAGGAGGTTTGGAAGGTTTGACAA AGAAATAGATATTGGTGTTCCAGATGAAGTTGGTCGCCTTGAGGTTCTTCGTGTCCATACAAAGAAAATGAAGCTCTCTGAAGATGTAGACTTGGAAAAA GTAGCCAAAGGAACTCAGGGGTATGTTGGTGCAGATCTTGCAGCTCTTTGCAGCGAATCTGCCCTACAATGCATTAGGGAAAAGATGGGCATCATTGATT TGGAAGATGATACGATTGATGCTGAGGTTCTTAATTCCATGGCCGTTACAAATGAGCACTTCAGCATTGCTCTCGGAACCAGCAATCCTTCTGCTCTTCG TGAAACCATTGTAGAAGTTCCCAATGTTAGATGGGAGGATATTGGTGGTCTTGAGAAGGTCAAGATGGAGCTTCAAGAGACTGTTCAATATCCGGTGGAG CATCCTGAGAAGTTTGAGAAGTTCGGTATGTCACCTTCTAAAGGAGTTCTTTTCTATGGTCCTCCTGGTTGTGGCAAAACATTGCTGGCTAAGGCTATTG CCAACGAATGTCAAGCTAATTTCATCAGTATCAAGGGTCCTGAGCTTCTAACCATGTGGTTTGGTGAGAGTGAAGCCAATGTCAGGGATGTTTTTGACAA GGCACGCCAGTCTGCTCCTTGTGTCATATTCTTCGATGAACTTGACTCCATTGCTATTCAAAGAGGAAACAGTGTAGGAGATGCTGGTGGTGCAGCTGAT AGAGTTTTGAACCAACTCCTAACTGAGATGGATGGTTTATCAGCCAAGAAAACCGTCTTTATAATTGGTGCTACCAACAGGCCTGATATAATCGACCCTG CACTTATGAGGCCAGGTCGCCTTGACCAGCTAATTTATATCCCTCTGCCAGACGAAGGTTCTCGACTACAGATCTTTAAGGCTTGCTTGAGAAAATCACC AGTCTCAAAAGATGTTGACCTCCAAGTTCTTGCCAAGCACACTGAAGGATTTAGTGGTGCTGATATCACAGAAATCTGTCAGAGGGCTTGCAAATATGCT GTCAGGGAGGACATCGAAAAGGATATCAAGAGGAAGATCGAGGGCCTGGAAGACAGCATGGAAGAAGGAATGACTTGGCTTAAGGTTTCTCACTTTGAAG AGTCCATGAGGTACGCTAGGAAGAGTGTGAGTGACTCTGATATTCTCAAGTACCAGATGTTTTCTCAAACTTTGCAGCAATCCAGAGGTTTTGGTTCTGA TTTCAAATTTTCGGAGGCGGCGACATCAGCTGATGGTCTCAATCCAGTTGTGACTTCAGCTGGTGGGGATGATGAACTATATTAA
AA sequence Show only first row Show all	>Potri.017G108200.1 pacid=42812874 polypeptide=Potri.017G108200.1.p locus=Potri.017G108200 ID=Potri.017G108200.1.v4.1 annot-version=v4.1 MGDQAGTNKRKRDFSDSIMERNKKTPNRLLVDEAINDDNSVITLNPATMEQLDIFRGDKLLIKGKKRRDTVCIALADDRCDQPKILMNKVVRSNLRVRLG DMVSVQLCHNLQYGKRVHLLPLDDTVDGLSGSLFGAYLKPYFKDSHRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVEPDTEIFCEGEAVKREDEERL DGVGYDDLGGVRKQLALIREMVELPLRFPQLFKTIGVKPPRGILLYGPPGTGKTLIARAIANETGAFFFCINGPEIMSKMAGESEQNLRKAFEEAEKNAP AIVFIDEIDSIAPKREKTGGEVERRIVSQLLTLMDGLKARAHVIVIGATNRPNSLDPALRRFGRFDKEIDIGVPDEVGRLEVLRVHTKKMKLSEDVDLEK VAKGTQGYVGADLAALCSESALQCIREKMGIIDLEDDTIDAEVLNSMAVTNEHFSIALGTSNPSALRETIVEVPNVRWEDIGGLEKVKMELQETVQYPVE HPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVRDVFDKARQSAPCVIFFDELDSIAIQRGNSVGDAGGAAD RVLNQLLTEMDGLSAKKTVFIIGATNRPDIIDPALMRPGRLDQLIYIPLPDEGSRLQIFKACLRKSPVSKDVDLQVLAKHTEGFSGADITEICQRACKYA VREDIEKDIKRKIEGLEDSMEEGMTWLKVSHFEESMRYARKSVSDSDILKYQMFSQTLQQSRGFGSDFKFSEAATSADGLNPVVTSAGGDDELY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.017G108200 [exp]	0	1
AT3G28880			Ankyrin repeat family protein ...		Potri.004G129100 [exp]	2.64	0.8578
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.003G145950 [exp]	14.00	0.8510
AT3G22070			proline-rich family protein (....		Potri.007G120101 [exp]	30.91	0.8421
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029300 [exp]	49.07	0.8239	Pt-SNF4.2
AT2G04410			RPM1-interacting protein 4 (RI...		Potri.012G092601 [exp]	54.56	0.8254
AT5G11160		APT5	adenine phosphoribosyltransfer...		Potri.006G255900 [exp]	57.94	0.7976	Pt-APT2.2
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123600 [exp]	63.85	0.8113
					Potri.011G073216 [exp]	79.93	0.8076
AT3G48950			Pectin lyase-like superfamily ...		Potri.004G073900 [exp]	92.70	0.7989
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Potri.008G065500 [exp]	94.65	0.7579

Compare expression of checked genes

Potri.017G108200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.