Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38730 761 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09680 266 / 4e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 253 / 7e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 238 / 5e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G05670 239 / 1e-69 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT3G53700 238 / 5e-69 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 235 / 4e-68 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61400 225 / 3e-65 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 225 / 2e-64 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 222 / 2e-64 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131400 [exp] 261 / 5e-79 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G147700 [exp] 254 / 4e-76 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 256 / 9e-76 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G003700 [exp] 246 / 5e-73 AT1G11710 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 241 / 2e-70 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 240 / 5e-70 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.013G032600 [exp] 233 / 2e-68 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 232 / 7e-67 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.003G105700 [exp] 232 / 2e-66 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032174 [exp] 914 / 0 AT5G38730 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014513 [exp] 511 / 7e-180 AT5G38730 446 / 7e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 262 / 6e-78 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 252 / 2e-74 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 251 / 2e-72 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007468 [exp] 245 / 5e-72 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 243 / 7e-72 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042016 [exp] 235 / 4e-69 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006373 [exp] 233 / 3e-67 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 233 / 4e-67 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.017G108600.1 pacid=42813468 polypeptide=Potri.017G108600.1.p locus=Potri.017G108600 ID=Potri.017G108600.1.v4.1 annot-version=v4.1 ATGGCAACTTTGACTCCTATAAGCAATGAAACCCAGTTGCTTATTCAAAGTATTTGTGCATCCGTGATAAAGGGTAGCTGGAAAAATCTTTTGAGACCCA AATTTGGCTCTAACGATTACCATCTCATTACAACAACAGCAACAGTTCGTCAGGTACTTTTGCATCTCTCTTTATATGACCAAAGTCCTTGTCTTTCATG GGCTCTCTTTAAATGGATTGAATCTTCTGTTCCTAACTATAAACACTCATTACAATCTTCATGGACCATGCTTTATATTTTGACAAAGCATAAGCATTTC AAGACTGCTCATGCTTTTCTTGAAAATATTGCTTTCAAGGACTTCTTGTCAACTCAATCTGTTTTGAGTTCATTGGTGAAAATTCATGATGACCCAGATG TGAATTCTCATGTTTTGAGTTGGCTTGTGATAGTTTATGGGAATTCCAAGATGACCCACGAGGCTATTCAGGTTTTTGAGCACATGAGAGTGAATGGGTT TAGGCCCCATTTACATGCTTGTACTGTGCTATTGAATTCGTTGGCTAAGGACAGGTTGACGGATACAGTGTGGAAAATTTATAAGAAGATGGTTAAACTA GGGGTTGTAGCTAATATTCATGTGTATAATGTGCTGCTTCATGCTTGTTGTAAGTCTGGGGATGTGGAGAAGGCAGAGAAGGTTTTGAGTGAAATGGAAT TGAAGTGTGTTTTTCCGGATCTTTTCACGTACAATACGTTAATTTCGTTGTACTGTAAAAAGGGCATGCATTATGAAGCCTTATCTGTTCAAGATAGGAT GGAAATGGCTGGGATTAGTCCTGACATTTTTACTTATAATTCACTTATTTATGGGTTTTGTAGAGAAGGTAGAATGAGAGAGGCTGTGCAGCTTTTTAGG GATATCAAGGATGTTACTCCTAACCATGTGACTTATACTAGTTTGATTGATGGCTATTGTAGAGTAAATGACCTTGATGAAGCTTTGAGATTGAAGGAGG TGATGTCGGAAAAGGGGCTGTATCCAACTGTTATTACTTACAATTCAATTCTGCGCAAGTTGTGTGAGGGCGGCAGGTTAAGAGATGCAAATATACTGTT GAATGAGATGAGTGAGAGGAAAATTGAACCAGATAATGTCACTTGTAACACGTTGATCAATGCCTACTGCAAGATAGGTGATATGCGATCTGCTTTAAAA GTGAAGGACAAGATGGTGGGGGCTGGGTTAAAGCTAGACCAGTTTACTTACAAGGCATTGATCCATGGATTCTGCAAGGCAAAAGAGATTGATAAGGCTA AAGAGCTCTTGTTTGGTATGATGGATGCAGGATTTTCTCCTAGTTATTGCACCTATTCATGGCTTGTAGATAGTTATTGCAAGCAACAAAATGAAGAGGC AGTCATCAAACTTCCAGATGAGTTGGTGAGAAGAGGTTTGTGTGTTGATGTATCAGTGTACAGGGCGCTAATAAGGAGGTTTTGTAAAATAGAAAAGATT GATTGTGCTCAAAGAGTACTTGGTCTTATGAAAGATAAGGGTATATTTGGAGATAGTGTCGTCTACACAAGTTTGGCGTATGGTTACTGGAAAGTTGGAA AAGTCAATGTTACTTCAGATATTTTAGATGAAATGTACAAGAAAAGGCTGATGATCACTCTCAAAATTTATAGATCTTTTAATGCTTCTTATGCCAGTGA CAACAGCATCTTAAGTCTCTTCTGGAATCATGTGCTTGAGAGGCGCCTAATGTCAAAGAACATATTAAAAGATATGCAGTAG
AA sequence Show only first row Show all	>Potri.017G108600.1 pacid=42813468 polypeptide=Potri.017G108600.1.p locus=Potri.017G108600 ID=Potri.017G108600.1.v4.1 annot-version=v4.1 MATLTPISNETQLLIQSICASVIKGSWKNLLRPKFGSNDYHLITTTATVRQVLLHLSLYDQSPCLSWALFKWIESSVPNYKHSLQSSWTMLYILTKHKHF KTAHAFLENIAFKDFLSTQSVLSSLVKIHDDPDVNSHVLSWLVIVYGNSKMTHEAIQVFEHMRVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKL GVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFCREGRMREAVQLFR DIKDVTPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALK VKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKI DCAQRVLGLMKDKGIFGDSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIYRSFNASYASDNSILSLFWNHVLERRLMSKNILKDMQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Potri.017G114400 [exp]	2.00	0.8717
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Potri.005G114800 [exp]	3.87	0.8332
AT1G80010	FAR1_related	FRS8	FAR1-related sequence 8 (.1)		Potri.003G031200 [exp]	5.09	0.8037
AT5G19420			Regulator of chromosome conden...		Potri.001G276900 [exp]	6.92	0.8080
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	9.59	0.8450
					Potri.001G265000 [exp]	10.48	0.8128
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	10.67	0.8310
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.018G132500 [exp]	10.95	0.7802
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	11.22	0.7919
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G133000 [exp]	12.32	0.8256

Compare expression of checked genes

Potri.017G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.