Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SAMDC.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02470 481 / 5e-171 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 473 / 6e-168 Adenosylmethionine decarboxylase family protein (.1.2) AT3G25570 452 / 4e-160 Adenosylmethionine decarboxylase family protein (.1.2) AT5G18930 247 / 1e-79 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106800 [exp] 635 / 0 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.010G133900 [exp] 531 / 0 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Potri.018G101500 [exp] 360 / 3e-123 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.008G198800 [exp] 252 / 1e-81 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 251 / 6e-81 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000156 [exp] 505 / 2e-179 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 500 / 1e-177 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 494 / 2e-175 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 487 / 9e-174 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 485 / 8e-173 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10040973 [exp] 370 / 4e-127 AT3G25570 372 / 9e-128 Adenosylmethionine decarboxylase family protein (.1.2) Lus10021951 [exp] 251 / 6e-81 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 244 / 2e-78 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [poplar] [flax] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Potri.017G108800.2 pacid=42813779 polypeptide=Potri.017G108800.2.p locus=Potri.017G108800 ID=Potri.017G108800.2.v4.1 annot-version=v4.1 ATGGCGCTGCCAGTCTCTGCAATCGGATTTGAAGGTTACGAAAAAAGGCTTGAAATATCTTTCCTAGAGCCTGGCTTCTTTTCTGACCCTGAAGGGAAGG GCCTGAGGTCTTTGTCCAAGGCTCAATTGGACGAGATTCTCAGACCAGCTGAATGTACTATTGTTGATTCGCTATCAAATGACCAGGTTGATTCTTATGT CCTGTCGGAATCCAGTCTCTTTGTGTACCCTTACAAAGTTATTATCAAAACATGTGGGACTACCAAACTGCTTCTCTCGATACCGGTGATTCTTAAGCTC GCTGATGCCCTTTCACTCACTGTATGTTCTGTGAGGTATACTCGTGGGAGCTTTCTATGCCCTGGGGCTCAGCCATTTCCACACCGCAACTTCTGTGAGG AGGTAGCTGTCCTTGACGATCACTTCAGTAAACTTGGTTTAAACAGTGTGGCATATGTGATGGGTGGTCTTGACAAAACTCAGAAATGGCATGTTTACTC TGCCTCTGCCGATATAGAGAGCCATTCTGGCCCTGTTTACACTCTGGAAATGTGCATGACTGGTTTGGGCAGGAAACAAGCATCTGTTTTCTACAAAACA CATTCCAGTTCAGCTGCTGCGATGACTGAGGATTCCGGTATAAGGAAAATCCTTCCACAGTCTGAGATCTGTGATTTTGATTTTGACCCATGTGGTTACT CTATGAATGCCATTGAAGGGAGTGCAATTTCCACAATCCACGTCACTCCAGAAGATGGTTTCAGCTATGCAAGTTTTGAGGCTGTGGGCTATGATCTTCA AGATTTGAATTTGAGTCGGCTGCTTGAAAGGGTCTTGGCTTGCTTTGAACCGACCATGTTCTCCGTTGCCTTGCATTCTAATATCAAGGGTGCCGAACTT AGAGCAAAGTTTCCCCTGGACGTGGAAGGTTACTCTGGCGGAGGAGGGAACTATGAAATGCTTGGGAAAGGTGGATCGATCATCTACCACAGCTTTGCAA GGACTGGAGGCAGTGCATCTCCCAGGTCTATCCTGAAATGTTGTTGGAGTGAGGATGAGAAGGACGAGGAAGCTGAAGAGAAGTAG
AA sequence Show only first row Show all	>Potri.017G108800.2 pacid=42813779 polypeptide=Potri.017G108800.2.p locus=Potri.017G108800 ID=Potri.017G108800.2.v4.1 annot-version=v4.1 MALPVSAIGFEGYEKRLEISFLEPGFFSDPEGKGLRSLSKAQLDEILRPAECTIVDSLSNDQVDSYVLSESSLFVYPYKVIIKTCGTTKLLLSIPVILKL ADALSLTVCSVRYTRGSFLCPGAQPFPHRNFCEEVAVLDDHFSKLGLNSVAYVMGGLDKTQKWHVYSASADIESHSGPVYTLEMCMTGLGRKQASVFYKT HSSSAAAMTEDSGIRKILPQSEICDFDFDPCGYSMNAIEGSAISTIHVTPEDGFSYASFEAVGYDLQDLNLSRLLERVLACFEPTMFSVALHSNIKGAEL RAKFPLDVEGYSGGGGNYEMLGKGGSIIYHSFARTGGSASPRSILKCCWSEDEKDEEAEEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.017G108800 [exp]	0	1	SAMDC.4
AT3G02470		SAMDC	S-adenosylmethionine decarboxy...		Potri.004G106800 [exp]	2.00	0.7958	Pt-SAMDC.3
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	18.65	0.7233
AT1G19980			cytomatrix protein-related (.1...		Potri.002G022200 [exp]	22.49	0.7099
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Potri.006G129300 [exp]	23.62	0.7549
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.012G097400 [exp]	25.27	0.7104	PPD3.2
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	26.68	0.7540
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010150 [exp]	32.86	0.7165
AT4G14930			Survival protein SurE-like pho...		Potri.010G088000 [exp]	33.04	0.6643
AT4G34710		SPE2, ADC2, ATA...	arginine decarboxylase 2 (.1.2...		Potri.004G163300 [exp]	34.42	0.7033	Pt-SPE1.1
AT5G24320			Transducin/WD40 repeat-like su...		Potri.005G057600 [exp]	41.78	0.6914

Compare expression of checked genes

Potri.017G108800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.