Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PAM1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15930 575 / 0 PAM1 plant adhesion molecule 1 (.1) AT3G02460 565 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 134 / 8e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G37290 122 / 3e-30 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G55020 96 / 3e-21 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G39280 89 / 6e-19 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G30710 79 / 6e-16 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G13730 61 / 4e-10 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT1G04830 59 / 1e-09 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 59 / 2e-09 RabGAP/TBC domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106700 [exp] 628 / 0 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1) Potri.014G163400 [exp] 144 / 2e-39 AT3G07890 719 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.002G218100 [exp] 144 / 3e-39 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.006G133400 [exp] 124 / 4e-31 AT2G37290 875 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.008G046600 [exp] 105 / 2e-24 AT3G55020 965 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.010G215000 [exp] 101 / 3e-23 AT3G55020 1039 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.007G134200 [exp] 79 / 4e-16 AT2G30710 692 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.001G316700 [exp] 67 / 4e-12 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 64 / 3e-11 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003047 [exp] 587 / 0 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 576 / 0 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 142 / 2e-38 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10012363 [exp] 141 / 3e-38 AT3G07890 698 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10014020 [exp] 107 / 5e-25 AT2G37290 801 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10040349 [exp] 96 / 3e-21 AT3G55020 895 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10041425 [exp] 94 / 9e-21 AT3G55020 919 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10023472 [exp] 94 / 2e-20 AT3G55020 865 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008148 [exp] 80 / 3e-16 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 77 / 1e-15 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.017G109000.1 pacid=42813536 polypeptide=Potri.017G109000.1.p locus=Potri.017G109000 ID=Potri.017G109000.1.v4.1 annot-version=v4.1 ATGGAGAAGAAAAAAATAGATGAATATGAACCAGGACCGCCTCCTTCACCAAGACCACTGGATAGGTTTGGCTTTGTGAAGCAAGAGGTTAATAATTCAC CACATGGTTTAACCAAAGGAAGGTCAGCTTATGAATTTGAGAGGGAGGAAAGAAGGGTAAGAAAATGGAGGAAGATGATTGGGGTTGGAGGGAGTGATTG GAAGCATTATGTTCGAAGAAAACCTCATGTTGTTAAGAGGCGCATAAGGAAAGGAATCCCTGACTGTTTAAGGGGTCTTGTTTGGCAGTTGATCTCCGGA AGTCGAGACCTTTTGCTGATGAACCCTGGGGTTTATGAGCAACTAGTTATATATGAGACATCAGCATCGGAGCTGGATATAATTAGAGATATTTCTCGGA CCTTCCCATCGCATGTTTTCTTCCAGCAGAGACATGGTCCTGGTCAAAGGTCGCTGTACAATGTTTTGAAGGCTTACTCTGTGTATGATAGAGATGTTGG ATATGTTCAGGGGATGGGATTTTTAGCTGGTTTACTACTTCTTTATATGAGTGAAGAGGATGCTTTTTGGTTGTTGGTTGCATTGCTGAAAGGAGCGGTC CATGCTCCAATGGAGGGATTATATCAGGTGGGTCTGCCTCTTGTACAACAATATCTCTTTCAGTTTGACTGCTTGATGAAGGAGCATATGCCGAAACTGG GAGAGCATTTCACCCAAGAAATAATAAATCCTAGCATGTATGCAAGCCAGTGGTTTATAACTGTTTTCTCATACTCTTTTCCATTCCACTTGGCCCTTCG GATTTGGGATGTCTTCCTTTACGAGGGTGTAAAAATTGTTTTCAAAGTGGGTCTGGCACTGCTAAAATATTGCCATGATGACTTGGTCAAATTGCCCTTT GAGAAGCTTGTACATGCTTTGCGTAATTTCCCTGAGGGTGCAATGGATCCAGATACAGTACTGCCTATGGCTAACTCCATCAAGGTGTCCAGACGTTTGG AAGAGCTGAAACAGGAGTATGATAAGAAGAATGGAAAGCTTAGTCATTCCACAGAAATTAACAGGAATCAGGAACAGTTACAATGA
AA sequence Show only first row Show all	>Potri.017G109000.1 pacid=42813536 polypeptide=Potri.017G109000.1.p locus=Potri.017G109000 ID=Potri.017G109000.1.v4.1 annot-version=v4.1 MEKKKIDEYEPGPPPSPRPLDRFGFVKQEVNNSPHGLTKGRSAYEFEREERRVRKWRKMIGVGGSDWKHYVRRKPHVVKRRIRKGIPDCLRGLVWQLISG SRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLLLLYMSEEDAFWLLVALLKGAV HAPMEGLYQVGLPLVQQYLFQFDCLMKEHMPKLGEHFTQEIINPSMYASQWFITVFSYSFPFHLALRIWDVFLYEGVKIVFKVGLALLKYCHDDLVKLPF EKLVHALRNFPEGAMDPDTVLPMANSIKVSRRLEELKQEYDKKNGKLSHSTEINRNQEQLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15930		PAM1	plant adhesion molecule 1 (.1)		Potri.017G109000 [exp]	0	1	PAM1.3
AT1G69550			disease resistance protein (TI...		Potri.005G030365 [exp]	2.64	0.9532
					Potri.002G056400 [exp]	14.14	0.9065
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072100 [exp]	17.54	0.9298
AT4G31980			unknown protein		Potri.003G207900 [exp]	23.97	0.9127
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014700 [exp]	24.31	0.8775
AT5G35390			Leucine-rich repeat protein ki...		Potri.006G078600 [exp]	29.49	0.9285
					Potri.017G109401 [exp]	40.00	0.9234
AT1G72890			Disease resistance protein (TI...		Potri.011G012901 [exp]	40.24	0.8645
AT3G14470			NB-ARC domain-containing disea...		Potri.006G275800 [exp]	41.71	0.9258
AT5G27550			P-loop containing nucleoside t...		Potri.005G030271 [exp]	44.49	0.9060

Compare expression of checked genes

Potri.017G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.