Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38710 502 / 2e-175 Methylenetetrahydrofolate reductase family protein (.1) AT3G30775 467 / 2e-161 PDH1, PRODH, PRO1, AT-POX, ATPOX, ATPDH, ERD5 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106400 [exp] 791 / 0 AT5G38710 532 / 0.0 Methylenetetrahydrofolate reductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005114 [exp] 554 / 0 AT3G30775 494 / 4e-172 proline dehydrogenase 1, EARLY RESPONSIVE TO DEHYDRATION 5, ARABIDOPSIS THALIANA PROLINE OXIDASE, Methylenetetrahydrofolate reductase family protein (.1) Lus10003051 [exp] 539 / 0 AT5G38710 497 / 2e-173 Methylenetetrahydrofolate reductase family protein (.1) Lus10034094 [exp] 531 / 0 AT5G38710 494 / 4e-172 Methylenetetrahydrofolate reductase family protein (.1) Lus10034095 [exp] 494 / 2e-173 AT5G38710 460 / 2e-160 Methylenetetrahydrofolate reductase family protein (.1) Lus10003053 [exp] 355 / 3e-119 AT5G38710 311 / 1e-102 Methylenetetrahydrofolate reductase family protein (.1) Lus10003052 [exp] 50 / 4e-08 AT5G38710 63 / 1e-13 Methylenetetrahydrofolate reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0086 [poplar] [flax] FAD_oxidored PF01619 [poplar] [flax] Pro_dh Proline dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.017G109300.1 pacid=42813547 polypeptide=Potri.017G109300.1.p locus=Potri.017G109300 ID=Potri.017G109300.1.v4.1 annot-version=v4.1 ATGGCCACCAAAGTTCTCCCGCCAAAACAACTCCAAAACCTCCGTTTCTTCATCACAAGGTCTCTTAACACCTCCTCCTCCTCCTCCTCCAAAGCCGCCG CCGCCTCTCCTCTAAATTTGGCTGAAAAACCCGAACCCCCTATCCAAGAACCTCCCACTATCATTCAAGAACATGCAAAACCATCCATTCTAGACTTTAA TGACCATCAAAAACTTTTCTCAAATTTGCCAACCACCAAACTCTTGCACGCATCTTCAATTCTTCACTTGGTTTCTATAGGTCCTCTGGTTGACTTTGGG ATGTGGGTTATGAATTCCAGGATTATGGAGACAGATAATATTGTACGTGATGTTGTGTTAAAGACGGTAAGGCATACGTTCTTTAAACACTTTTGTGCTG GAGAAGATGTTGTTGAGGCCAGAAGGTGTTTTGAGAGAGTTAATGAAGCCGGTTTGAGAGTAATGTTGGATTTTGCTGTTGAATATACAAGTAATAATGA TGCTTGTGATCAGAATCTGAAAGGGTTTCTTGATTCTGTTCAATTAGCCATGTCTCTTCCTCCATCTTCTGTGAGCAGTGTGGTGGCAAAGGTCACAGCA ATGTGCCCCTTAAGCTTGTTAGAGAGAGTTAGTGATTTGTTAAGGTGGCAACAAAGAGATCCTTCCTTCAACCTTCCATGGAAACAGAACAGTTTTCCAA TTTTTTCTGATTCTAGCCCTTTGTATCATACACTTAAAAAACCAGAACCATTAACCCCACAAGAAGAGAATGATCTCCAATTAGGCCAGGAGAGATTGTG GAAACTATGTGAAAAATGTGTCCAGGTCAATATCCCGTTGACGGTGGATGCAGAGCATATATCAGTTCAACCTGCCATTGATTACTTGACGTATTTGACA GCAATCAAGTACAACAAAAATGATAATCCCATTGTGTATGGTACAATTCAAGCCTACTTGAAAGACGCAAAAGAGAGGTTGTTACTTGCAACAAAAGCCG CTGACAAGATGGGAGTTCCTATGGGGATTAAGTTAGTGAGGGGCGCTTATATGTCAAGTGAAAGAAAAACAGCCTCTTCGTTAGGCTATGAATCTCCAAT TCACAATAGTATTCAAGAGACACATGCTTGCTACAATGATTGTGTTTCTTTCATGCTTGAAAAGATCGCTAATAGCTCAAATGCAGTCATTCTTGCAACA CATAATGTTGAATCAGGAAGATTGGCAGCGACGAAGGCAATAGACTTGGGGATTGAGAAGAGGAACCAAAAGCTTGAGTTTGCACAGCTATATGGAATGT CAGATGCGCTTTCATTTGGTTTAAGCAATGCAGGTTTTCTGGTTAGCAAATACACGCCATACGGGTCTATTGAGATGGTTATCCCTTACCTTCTAAGGAG GGCTGAAGAGAATAGGGGACTGTTATCTGCTTCAAGCATTGATAGGGAACTCACGAGGAAGGAGTTGAAGAGAAGGCTTAAAGCTGCTATATTTTGA
AA sequence Show only first row Show all	>Potri.017G109300.1 pacid=42813547 polypeptide=Potri.017G109300.1.p locus=Potri.017G109300 ID=Potri.017G109300.1.v4.1 annot-version=v4.1 MATKVLPPKQLQNLRFFITRSLNTSSSSSSKAAAASPLNLAEKPEPPIQEPPTIIQEHAKPSILDFNDHQKLFSNLPTTKLLHASSILHLVSIGPLVDFG MWVMNSRIMETDNIVRDVVLKTVRHTFFKHFCAGEDVVEARRCFERVNEAGLRVMLDFAVEYTSNNDACDQNLKGFLDSVQLAMSLPPSSVSSVVAKVTA MCPLSLLERVSDLLRWQQRDPSFNLPWKQNSFPIFSDSSPLYHTLKKPEPLTPQEENDLQLGQERLWKLCEKCVQVNIPLTVDAEHISVQPAIDYLTYLT AIKYNKNDNPIVYGTIQAYLKDAKERLLLATKAADKMGVPMGIKLVRGAYMSSERKTASSLGYESPIHNSIQETHACYNDCVSFMLEKIANSSNAVILAT HNVESGRLAATKAIDLGIEKRNQKLEFAQLYGMSDALSFGLSNAGFLVSKYTPYGSIEMVIPYLLRRAEENRGLLSASSIDRELTRKELKRRLKAAIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38710			Methylenetetrahydrofolate redu...		Potri.017G109300 [exp]	0	1
AT5G04980			DNAse I-like superfamily prote...		Potri.008G011000 [exp]	6.16	0.8061
AT3G24770		CLE41	CLAVATA3/ESR-RELATED 41 (.1)		Potri.002G241300 [exp]	14.21	0.8051
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Potri.002G014300 [exp]	16.52	0.7829
AT4G16790			hydroxyproline-rich glycoprote...		Potri.003G079900 [exp]	17.57	0.7996
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.001G238400 [exp]	23.40	0.7990
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.008G055100 [exp]	23.45	0.7880
AT1G19715			Mannose-binding lectin superfa...		Potri.002G030400 [exp]	31.93	0.7688
					Potri.006G098500 [exp]	32.18	0.7714
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	32.44	0.7828
AT3G12090		TET6	tetraspanin6 (.1)		Potri.010G220300 [exp]	34.81	0.7842

Compare expression of checked genes

Potri.017G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.