Plant FIBer expression Database

Potri.017G109401 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G109401.1 pacid=42813089 polypeptide=Potri.017G109401.1.p locus=Potri.017G109401 ID=Potri.017G109401.1.v4.1 annot-version=v4.1
ATGCACCATATAATGGTGGTGTCACTTGCAACTTTTCACTTAATAGTAGCTTATAGAATTATATCCTCTGTTAGCGTTAAAAAAAATGAACTATGCCCTC
TGCTGATGAAATCAGGCTTGAATTTCCTCTGTTTCTCTCCCACGCACACCACTCGTGCACGCTTACACTTGGAATGCCTTGATAAGGAGCTGGGACCGCT
TCTTGATAATTTGTTTAGCCAATTTCAGAATTACAAGATGCATATTTATCTACATTACAATTTCAAATACCATAACCTAGAGGGGTGGCTTACCGCTTCC
TCAAACTTAGGAAAAGGCCAGCCACTATGGAGTTTTAACTTTGATTCCGTACTCCTTGTTATTTGGATATGTTCAGGTCTATTTACCTTGGTAATAATTA
CACTTGCTACTTCTTAG
AA sequence
>Potri.017G109401.1 pacid=42813089 polypeptide=Potri.017G109401.1.p locus=Potri.017G109401 ID=Potri.017G109401.1.v4.1 annot-version=v4.1
MHHIMVVSLATFHLIVAYRIISSVSVKKNELCPLLMKSGLNFLCFSPTHTTRARLHLECLDKELGPLLDNLFSQFQNYKMHIYLHYNFKYHNLEGWLTAS
SNLGKGQPLWSFNFDSVLLVIWICSGLFTLVIITLATS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G109401
[exp]
0 1
AT2G01980 ATSOS1, SOS1, A... ARABIDOPSIS SALT OVERLY SENSIT... Potri.007G100500
[exp]
11.83 0.9706 Pt-NHX8.1
AT1G68820 Transmembrane Fragile-X-F-asso... Potri.010G129932
[exp]
15.36 0.9545
AT1G05680 UGT74E2 Uridine diphosphate glycosyltr... Potri.007G117302
[exp]
15.84 0.9144
AT5G67360 ARA12 Subtilase family protein (.1) Potri.004G184600
[exp]
24.49 0.9632
Potri.006G271692
[exp]
24.73 0.9683
Potri.006G271901
[exp]
26.83 0.9658
AT3G14470 NB-ARC domain-containing disea... Potri.006G275800
[exp]
27.45 0.9682
AT5G01750 Protein of unknown function (D... Potri.016G131100
[exp]
27.65 0.9568
AT1G78980 SRF5 STRUBBELIG-receptor family 5 (... Potri.014G001200
[exp]
27.92 0.9687
Potri.004G184650
[exp]
31.62 0.9649

Potri.017G109401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.