Plant FIBer expression Database

Potri.017G109500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G30841 803 / 0 Cofactor-independent phosphoglycerate mutase (.1)
AT4G09520 795 / 0 Cofactor-independent phosphoglycerate mutase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G106200
[exp]
933 / 0 AT3G30841 823 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003060
[exp]
845 / 0 AT3G30841 814 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
Lus10034089
[exp]
844 / 0 AT3G30841 814 / 0.0 Cofactor-independent phosphoglycerate mutase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0088 Alk_phosphatase PF01676 Metalloenzyme Metalloenzyme superfamily
CL0088 PF10143 PhosphMutase 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
Representative CDS sequence
>Potri.017G109500.3 pacid=42813478 polypeptide=Potri.017G109500.3.p locus=Potri.017G109500 ID=Potri.017G109500.3.v4.1 annot-version=v4.1
ATGGTTACTGCCCAGCATCCAAAGAGGAGAGTGGCATTTATCCTGATTGATGGGTTGGGTGATGTATCATTGCCAAGACTTGGATACAAGACTCCTTTGC
AAGCAGCGAACGTGCCGAACTTAGATGCTATTGCATCTGCCGGAGTTAATGGCCTTATGGACCCAGTTGAAGTAGGCTTGGGTTGTGGAAGTGACACTGC
TCACCTTTCTTTATTAGGTTATGACCCACGAGTGTACTACAAGGGTCGAGGAGCCTTTGAGTCCATGGGTGCTGGATTGGCAATGTCTCCTGGCGATATT
GCATTCAAATCAAATTTTGCAACATTAGATGAGGAAACTGGAATAGTCACCAGTAGAAGGGCTGACAGGCATTTTGATAAAGAAGGGCCAATTCTCTGTG
CAGCTCTGGATGGAATGAAGTTGCCGTCTTTCCCGGAATATGAAGTCAGAGTCAGGTATGCCACAGAACATAGATGTGGAGTGGTGGTGAAAGGGCCAAG
ACTGAGTTGTAATATATCAGGAACAGATCCACTGAAGGACAACCGCTTAATTCTTCAAGCTGAAGCCTTAGATGACACTGATGAGGCAAGACATACAGCT
GCAGTTGTTAATGAGTTATCCAGGGAGATATCTCGTGTTCTGGTTTCTCACCCATTAAATGCAAAACGAGCAGCAGAAGGAAAGAATATTGCTAATGTTG
TCCTCTTACGAGGATGTGGCATTCGAATTGAGGTTCCTTCTTTTGAAAATAAACATGGTTTATGGCCATGCATGGTAGCTCCCACTAAAATCATAGCTGG
TTTAGGGCTATCATTAGATATTGATATCCTAGAAGCTCCTGGAGCAACTGGAGATTATCAAACACTTTTGACTTCCAAAGCAACGGTCATAGCTAAGGCA
CTCTCAGCTCCATTGGCGTCTTCTCCCAATGTATTTGTACCAGGGGAGGACGAGCACAAACCAGGACGACCAGATGGCTATGATTTTGGGTTTCTCCATA
TTAAGGCAATAGATGATGCAGGCCATGACAAGGCAAGCATTTTGAAAGTTAAAGCATTGGAAGCTGTGGATCGAGCTATAGGCCAGCTGGCCAAGCTCCT
CTTGCAGGCAGAATCAACTGGAAAGTTCCAGTACTTCCTTTGTGTCACTGGAGATCACTCTACACCAGTTGAATATGGAGACCATAGTTTTGAACCAGTT
CCATTTTCCATGTGCCGGTTGAGAGATTTTGTGGGTGCAGTAGGTGGAGAGTCTATCATCATGGAAACTTCCCTTGATCCATTTCCTCTTCCAGTTGTTA
AGGCTGGTGAAAACCTAGTGGAAACTGAGAGCGCAGAAAAGGAGAGGAGCAGCAAACAGCTTAAAGCTTTCAGTGGTGATTCAGTTTGTGAACTTAGTGA
GATAGCAGCAGCAAGAGGATGCCTTGGACGGTTTCCTGGGGGACAAATGATGGGTATTATCAAGGCATTTCTTGAACTAAATGCTTGA
AA sequence
>Potri.017G109500.3 pacid=42813478 polypeptide=Potri.017G109500.3.p locus=Potri.017G109500 ID=Potri.017G109500.3.v4.1 annot-version=v4.1
MVTAQHPKRRVAFILIDGLGDVSLPRLGYKTPLQAANVPNLDAIASAGVNGLMDPVEVGLGCGSDTAHLSLLGYDPRVYYKGRGAFESMGAGLAMSPGDI
AFKSNFATLDEETGIVTSRRADRHFDKEGPILCAALDGMKLPSFPEYEVRVRYATEHRCGVVVKGPRLSCNISGTDPLKDNRLILQAEALDDTDEARHTA
AVVNELSREISRVLVSHPLNAKRAAEGKNIANVVLLRGCGIRIEVPSFENKHGLWPCMVAPTKIIAGLGLSLDIDILEAPGATGDYQTLLTSKATVIAKA
LSAPLASSPNVFVPGEDEHKPGRPDGYDFGFLHIKAIDDAGHDKASILKVKALEAVDRAIGQLAKLLLQAESTGKFQYFLCVTGDHSTPVEYGDHSFEPV
PFSMCRLRDFVGAVGGESIIMETSLDPFPLPVVKAGENLVETESAEKERSSKQLKAFSGDSVCELSEIAAARGCLGRFPGGQMMGIIKAFLELNA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G30841 Cofactor-independent phosphogl... Potri.017G109500
[exp]
0 1
AT5G67380 ATCKA1, CKA1 casein kinase alpha 1 (.1.2) Potri.007G052800
[exp]
4.12 0.8395
AT5G07900 Mitochondrial transcription te... Potri.015G038400
[exp]
4.89 0.8109
AT1G77550 tubulin-tyrosine ligases;tubul... Potri.006G141900
[exp]
9.48 0.7996
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Potri.006G074300
[exp]
9.79 0.7927
AT3G58180 ARM repeat superfamily protein... Potri.002G041400
[exp]
12.40 0.7974
AT3G59630 diphthamide synthesis DPH2 fam... Potri.006G123700
[exp]
16.24 0.7849
AT4G08850 Leucine-rich repeat receptor-l... Potri.013G036600
[exp]
16.79 0.8144
AT4G31980 unknown protein Potri.003G209500
[exp]
22.18 0.8135
AT3G11810 unknown protein Potri.008G091600
[exp]
22.91 0.8114
AT5G05680 EMB2789, MOS7 MODIFIER OF SNC1,7, EMBRYO DEF... Potri.010G189700
[exp]
25.27 0.8139

Potri.017G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.