Plant FIBer expression Database

Potri.017G109600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38530 828 / 0 TSBtype2 tryptophan synthase beta type 2 (.1)
AT5G54810 123 / 3e-30 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1)
AT4G27070 123 / 4e-30 TSB2 tryptophan synthase beta-subunit 2 (.1)
AT5G28237 115 / 1e-27 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G136000
[exp]
124 / 2e-30 AT5G54810 755 / 0.0 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1)
Potri.001G420300
[exp]
120 / 2e-29 AT4G27070 754 / 0.0 tryptophan synthase beta-subunit 2 (.1)
Potri.011G024900
[exp]
119 / 6e-29 AT5G28237 586 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000306
[exp]
808 / 0 AT5G38530 779 / 0.0 tryptophan synthase beta type 2 (.1)
Lus10043059
[exp]
125 / 1e-30 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1)
Lus10011154
[exp]
121 / 2e-29 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1)
Lus10012746
[exp]
109 / 3e-29 AT5G38530 107 / 3e-29 tryptophan synthase beta type 2 (.1)
Lus10018358
[exp]
102 / 3e-23 AT5G28237 555 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
Lus10007651
[exp]
62 / 7e-10 AT5G28237 483 / 4e-169 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00291 PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence
>Potri.017G109600.1 pacid=42814455 polypeptide=Potri.017G109600.1.p locus=Potri.017G109600 ID=Potri.017G109600.1.v4.1 annot-version=v4.1
ATGGCCATTCAAGCAACTTTCATAGCAGATCCAGTTCTCATTTCAAGCCCATCAAGAATCTCCATCAGAGGTTGGGAGCAATGTATTGGGTCTTTTGTGT
TGAAAACGAGGCCTAGGCATCCGAGGCTTTCAAATGGAGGCAGAGTCAGAGCAAGAGCTTCTCTGAATGCTGATTTGAAAGCGGTTGGCATTCCTCATCA
GTGGTACAATGTTGTTGCAGATCTTTCAGTGAAACCTCCTCCCCCACTGCATCCTAAAACATTTGAACCAGTCAAACCTGAAGATTTATCTCCTCTATTT
CCTGATGAGTTGATTAGGCAGGAGGCAAGCACTGACAAGTTCATAGATATCCCGGAAGAAGTTCTTGATATTTACAGTCTCTGGCGCCCAACTCCATTGA
TCAGAGCAAAGAGGTTGGAAAAGCTTCTCGATACACCTGCCAGAATTTACTACAAGTATGAAGGTGGCAGTCCAGCCGGATCCCATAAACCCAACACTGC
AGTCCCACAAGTTTTTTACAATGCGCAGCAAGGCATCAAGAATGTTGTGACAGAAACTGGTGCTGGCCAATGGGGATGTTCATTGGCCTTTGCGTGCAGC
TTATTTGGTCTTGACTGTGAGGTGTGGCAGGTTCGCGCTTCTTATGATCAGAAACCATATCGTAGATTAATGATGGAGACCTGGGGTGCAAAGGTACACC
CATCTCCATCAAGCATTACCGAGACTGGTAGGAGAATTCTCCAGATGGATCCGTCAAGTCCAGGAAGTTTAGGAATAGCTATATCAGAAGCTGTAGAGGT
TGCAGCTAAAAATGCTGACACCAAGTACTGCTTGGGGAGTGTGCTGAATCATGTTTTGTTGCATCAGACAGTCATAGGTGAGGAGTGCATAAAACAAATG
GAGGCTATTGGTGAAACCCCTGATGTGATAATAGGATGTACTGGTGGAGGGTCCAATTTTGCAGGACTCAGTTTCCCATTCATCCGAGAGAAGCTCAATG
GGAAAATCAACCCTGTCATAAAAGCTGTTGAACCTGCAGCATGTCCTTCACTGACAAAAGGTGTATACGCATATGATTATGGAGATACAGCAGGAATGAC
TCCATTAATGAAGATGCACACTCTAGGACATGACTTCATTCCTGACCCTATTCATGCTGGTGGATTGCGTTACCATGGCATGGCTCCATTAATTTCTCAT
GTGTATGAACTGGGTTTCATGGAAGCAATGGCAATCCCTCAGATCGAGTGCTTTCGAGGTGCCATACAATTTGCTCGGTCGGAAGGACTGATACCAGCAC
CGGAGCCAACTCATGCAATCGCTGCTACCATAAGGGAAGCACTGCATTGTAAAGAGACTGGAGAAGCAAAGGTTATTCTCATGGCAATGTGTGGACATGG
CCATTTTGACCTGAAATCTTATGAGAAGTATTTGCAAGGAAAGATGGTTGACTTGTCATTCGATGAGGAGAAAATAAGAGCATCATTGGACAAAGTTCCT
CAGGTGACAAGAAATTGA
AA sequence
>Potri.017G109600.1 pacid=42814455 polypeptide=Potri.017G109600.1.p locus=Potri.017G109600 ID=Potri.017G109600.1.v4.1 annot-version=v4.1
MAIQATFIADPVLISSPSRISIRGWEQCIGSFVLKTRPRHPRLSNGGRVRARASLNADLKAVGIPHQWYNVVADLSVKPPPPLHPKTFEPVKPEDLSPLF
PDELIRQEASTDKFIDIPEEVLDIYSLWRPTPLIRAKRLEKLLDTPARIYYKYEGGSPAGSHKPNTAVPQVFYNAQQGIKNVVTETGAGQWGCSLAFACS
LFGLDCEVWQVRASYDQKPYRRLMMETWGAKVHPSPSSITETGRRILQMDPSSPGSLGIAISEAVEVAAKNADTKYCLGSVLNHVLLHQTVIGEECIKQM
EAIGETPDVIIGCTGGGSNFAGLSFPFIREKLNGKINPVIKAVEPAACPSLTKGVYAYDYGDTAGMTPLMKMHTLGHDFIPDPIHAGGLRYHGMAPLISH
VYELGFMEAMAIPQIECFRGAIQFARSEGLIPAPEPTHAIAATIREALHCKETGEAKVILMAMCGHGHFDLKSYEKYLQGKMVDLSFDEEKIRASLDKVP
QVTRN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G38530 TSBtype2 tryptophan synthase beta type ... Potri.017G109600
[exp]
0 1
Potri.002G076300
[exp]
2.23 0.8538
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Potri.017G014100
[exp]
2.44 0.8826
AT1G03230 Eukaryotic aspartyl protease f... Potri.019G064700
[exp]
3.46 0.8839
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.015G007600
[exp]
4.47 0.8730
AT5G67390 unknown protein Potri.007G053300
[exp]
8.36 0.8253
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Potri.013G149000
[exp]
9.48 0.8395
AT2G47115 unknown protein Potri.014G115200
[exp]
10.24 0.8497
AT4G02370 Protein of unknown function, D... Potri.014G127500
[exp]
10.58 0.8396
AT5G17760 P-loop containing nucleoside t... Potri.005G119900
[exp]
10.95 0.8165
Potri.016G037200
[exp]
12.32 0.7196

Potri.017G109600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.