Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67170 281 / 4e-91 unknown protein AT3G14750 144 / 9e-39 unknown protein AT5G61920 95 / 5e-22 unknown protein AT1G55170 96 / 8e-22 unknown protein AT2G30120 73 / 5e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G178100 [exp] 136 / 2e-36 AT5G61920 155 / 3e-46 unknown protein Potri.001G382700 [exp] 125 / 5e-32 AT3G14750 297 / 6e-100 unknown protein Potri.003G037900 [exp] 116 / 2e-29 AT1G55170 259 / 2e-86 unknown protein Potri.009G076700 [exp] 115 / 2e-28 AT3G14750 173 / 8e-52 unknown protein Potri.001G281400 [exp] 104 / 4e-25 AT2G30120 161 / 4e-48 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030976 [exp] 333 / 4e-110 AT1G67170 294 / 1e-96 unknown protein Lus10035371 [exp] 263 / 4e-85 AT1G67170 284 / 2e-95 unknown protein Lus10038143 [exp] 128 / 4e-33 AT3G14750 275 / 1e-91 unknown protein Lus10019966 [exp] 122 / 2e-31 AT1G67170 137 / 3e-38 unknown protein Lus10013698 [exp] 120 / 2e-30 AT3G14750 298 / 3e-100 unknown protein Lus10005563 [exp] 117 / 2e-29 AT3G14750 288 / 2e-96 unknown protein Lus10037647 [exp] 115 / 6e-29 AT1G55170 233 / 6e-76 unknown protein Lus10015629 [exp] 115 / 7e-29 AT1G55170 236 / 2e-77 unknown protein Lus10015495 [exp] 115 / 2e-28 AT1G67170 139 / 1e-38 unknown protein Lus10015628 [exp] 106 / 4e-26 AT1G55170 211 / 3e-68 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G109700.1 pacid=42813810 polypeptide=Potri.017G109700.1.p locus=Potri.017G109700 ID=Potri.017G109700.1.v4.1 annot-version=v4.1 ATGGCGAGTAAAGGTCGAATTCCACCTCCTCATTTAAGGCGTCCTCTTCCAGGATCTGGTATAGTTCATCCTGATTCATTTGGCTCAGGACTACGTCTGC CGCAAGGCCCTTTTCCTCCTTTTGAGATGTTGCCTCCCCCGGAAGTTATGGAACAGAAGATTGCTGCACAACATGGAGAGATGCAAAGACTTGCAACGGA GAACCAGAGACTTGCAGCAACTCATGGAACCTTGAGACAAGAACTTGCTGCTGCTCAACATGAGTTGCAGTTATTACATGCTCACATTGGAGCTGTCAAG GCTGAAAGAGAGCAACAAATGAGGGGACTTGTGGATAATATAGGCAAGATGGAAACTGAATTGAAAGACGCAGAGCCTGTAAGGTTGGAATTGCAGCAGG CACGGGTAGAGGCTGAGAATTTGCTTGTAACGAGGCAGGAACTTGTGTCTAAAATTCATCAGTTGAGTCAGGATCTTCACAGGGCCCAGGTAGATGTGCA GCAGATTCCTGCTCTGATGTCAGAACTCGAGGGTCTCAGACAGGAATATCAACGATGCAGGGTTTCATATGATTACGAGAAGAAATTATTTCATGACCAC CTTGAGCAACTTCAGACGATGGAGAAGAACTATATCACAATGTCTAGGGAATTGGAAAAGCTTAGATCAGAATTGACTAAAACAGCGAATGTTGATATAA GAAATGTTGCAGGAGGGCCTTATGGTGGCCCCGCTGGGAACGAGAGTGAGGCATCTGGGCATCCGGCAGGAAAAAATATATACGAAGATGGCTATGGCAT TCCGCAAAGCCAGGGACATCCTGCTCTTCATAACTCTGGTGCTGCAAATATTGGTGCTGTTGGTAATGCTAGTGCTGGTACTGCGACTCCTTATGCTGGG GCTCAATCTGGTGCTGCGCCCTCAAAACCTGGTTATGAGGCACCAAGAGGCCCTGCCTATGAGCCACCAAAAGTACCTGGTTATGATGCATCAAGATTGC CTGGCTATGATATGCAAAGGGGACACGGATATGATGCTCAGAGAGGGCCTGGATATGATGCTCAGAGAGTACCCGGTTATGATCCACAGAGACTTGCTGT TTATGACATTCAGAGAGGACATGCATATGATGCACAAAGAGGACAAGGTTATGATGCGCAGAGACTACCTAATTATCATGCATCCAGGGGTGCTGGCTAT GATGCAGCAGCATCCAGGGGTGCCGCTGGGCCACAAGGGCATGTGGCACCACCTGCAAACAATATGCCATACGGGTCTGCAACTCCACCAACTCATTCTG GAAGTGGGTACGAAGCACCAGCTAGAGGTGTCGCCGGACCACATGGGCAAATGGCAGCTGGAAACAACATGCCTTACGGGTCTGCAACGCCACCAACTCG TTCTGGTAGTGTGTATGAGGCATCGGCTAGAGCTCCAAACCCTGCCAGGAGATGA
AA sequence Show only first row Show all	>Potri.017G109700.1 pacid=42813810 polypeptide=Potri.017G109700.1.p locus=Potri.017G109700 ID=Potri.017G109700.1.v4.1 annot-version=v4.1 MASKGRIPPPHLRRPLPGSGIVHPDSFGSGLRLPQGPFPPFEMLPPPEVMEQKIAAQHGEMQRLATENQRLAATHGTLRQELAAAQHELQLLHAHIGAVK AEREQQMRGLVDNIGKMETELKDAEPVRLELQQARVEAENLLVTRQELVSKIHQLSQDLHRAQVDVQQIPALMSELEGLRQEYQRCRVSYDYEKKLFHDH LEQLQTMEKNYITMSRELEKLRSELTKTANVDIRNVAGGPYGGPAGNESEASGHPAGKNIYEDGYGIPQSQGHPALHNSGAANIGAVGNASAGTATPYAG AQSGAAPSKPGYEAPRGPAYEPPKVPGYDASRLPGYDMQRGHGYDAQRGPGYDAQRVPGYDPQRLAVYDIQRGHAYDAQRGQGYDAQRLPNYHASRGAGY DAAASRGAAGPQGHVAPPANNMPYGSATPPTHSGSGYEAPARGVAGPHGQMAAGNNMPYGSATPPTRSGSVYEASARAPNPARR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67170			unknown protein		Potri.017G109700 [exp]	0	1
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.004G209800 [exp]	8.83	0.7622	RPD3.2
AT3G06180			Ribosomal protein L34e superfa...		Potri.008G201700 [exp]	11.48	0.8189
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.015G005000 [exp]	12.96	0.7990
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.006G039400 [exp]	13.74	0.7922
					Potri.006G029500 [exp]	17.20	0.8418
AT2G38610			RNA-binding KH domain-containi...		Potri.019G132100 [exp]	17.66	0.7991
AT4G24500			hydroxyproline-rich glycoprote...		Potri.002G111500 [exp]	25.78	0.7940
AT1G71840			transducin family protein / WD...		Potri.019G087200 [exp]	25.92	0.7755
AT1G26665			Mediator complex, subunit Med1...		Potri.003G146900 [exp]	29.79	0.7874
AT3G07440			unknown protein		Potri.002G250500 [exp]	34.98	0.7999

Compare expression of checked genes

Potri.017G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.