Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59240 321 / 1e-112 Ribosomal protein S8e family protein (.1) AT5G20290 296 / 7e-103 Ribosomal protein S8e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360500 [exp] 369 / 9e-132 AT5G59240 295 / 3e-102 Ribosomal protein S8e family protein (.1) Potri.001G262100 [exp] 350 / 3e-124 AT5G59240 302 / 2e-105 Ribosomal protein S8e family protein (.1) Potri.009G056900 [exp] 346 / 1e-122 AT5G59240 302 / 3e-105 Ribosomal protein S8e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025887 [exp] 301 / 1e-104 AT5G59240 341 / 2e-120 Ribosomal protein S8e family protein (.1) Lus10002338 [exp] 316 / 5e-103 AT3G25230 874 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10003171 [exp] 311 / 8e-102 AT3G25230 871 / 0.0 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) Lus10016587 [exp] 270 / 1e-91 AT5G59240 304 / 4e-105 Ribosomal protein S8e family protein (.1) Lus10003761 [exp] 238 / 6e-80 AT5G59240 277 / 8e-96 Ribosomal protein S8e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01201 [poplar] [flax] Ribosomal_S8e Ribosomal protein S8e
Representative CDS sequence Show only first row Show all	>Potri.017G110000.1 pacid=42814532 polypeptide=Potri.017G110000.1.p locus=Potri.017G110000 ID=Potri.017G110000.1.v4.1 annot-version=v4.1 ATGGGTATCTCACGTGACTCTATGCACAAGAGGCGTGCCACTGGAGGCAAGAAGAAGGCCTGGAGAAAGAAGAGAAAGTATGAGCTAGGCCGTCAGCCTG CAAGCACTAAGCTCTCAAGCAACAAGACTGTCAGAAGAATTCGTGTGCGAGGAGGCAATGTGAAGTGGAGGGCCCTCAGATTGGATACTGGGAACTACTC GTGGGGCAGTGAAGCTGTCACTCGCAAAACCCGTATTCTTGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTCCGAACCCAGACTCTTGTCAAAAGT GCTATTGTTCAGGTGGATGCTGCCCCTTTCAAGCAATGGTACCTTCAGCATTATGGGGTTGACATTGGTAGGAAGAAGAAGGCTGTGGTGAAGAAGGAAA CCCCTGAGCAGGAAGGAGAAGCAACTACAGAAGAAACAAAGAAGAGCAACCATGTCATCAGGAAGCTTGAGAAGCGTCAACAGGTTCGTAAGCTAGATCC TCACATAGAAGAGCAGTTTGGAAGTGGTAGGCTGTTGGCTTCCATCTCTTCTCGACCTGGTCAATGTGGCAGAGCTGATGGATACATCTTGGAAGGAAAA GAACTTGAATTTTATATGAAGAAGATCCAGAGGAAGAAGGGAAAGGGTGCTGGTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.017G110000.1 pacid=42814532 polypeptide=Potri.017G110000.1.p locus=Potri.017G110000 ID=Potri.017G110000.1.v4.1 annot-version=v4.1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPASTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKS AIVQVDAAPFKQWYLQHYGVDIGRKKKAVVKKETPEQEGEATTEETKKSNHVIRKLEKRQQVRKLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGK ELEFYMKKIQRKKGKGAGAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59240			Ribosomal protein S8e family p...		Potri.017G110000 [exp]	0	1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.017G101000 [exp]	4.79	0.9465	Pt-RPL7.7
AT3G20000		TOM40	translocase of the outer mitoc...		Potri.014G004100 [exp]	4.89	0.9399
AT5G59240			Ribosomal protein S8e family p...		Potri.001G262100 [exp]	8.71	0.9382	RPS8.3
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Potri.007G035600 [exp]	11.18	0.9145
AT5G25757			RNA polymerase I-associated fa...		Potri.006G241300 [exp]	11.61	0.9142
AT3G06700			Ribosomal L29e protein family ...		Potri.010G142001 [exp]	13.41	0.9097
AT1G74270			Ribosomal protein L35Ae family...		Potri.008G059400 [exp]	14.24	0.9337
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.002G057600 [exp]	16.61	0.9358	RPL18.7
AT1G49410		TOM6	translocase of the outer mitoc...		Potri.004G149200 [exp]	17.32	0.9168	TOM6.1
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Potri.004G113900 [exp]	18.02	0.9299

Compare expression of checked genes

Potri.017G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.