Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38560 654 / 0 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 563 / 0 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G68690 556 / 0 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G70460 484 / 3e-162 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 473 / 2e-157 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT1G10620 466 / 1e-154 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT3G24550 454 / 3e-151 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G24540 429 / 4e-143 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT2G18470 431 / 2e-142 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 432 / 3e-142 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G105200 [exp] 814 / 0 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 589 / 0 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 572 / 0 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.008G189700 [exp] 481 / 3e-160 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 457 / 4e-152 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.001G183000 [exp] 437 / 1e-145 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 437 / 4e-145 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.003G053301 [exp] 425 / 9e-141 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.007G027000 [exp] 427 / 1e-140 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003066 [exp] 709 / 0 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10034082 [exp] 704 / 0 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10017898 [exp] 537 / 0 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10035071 [exp] 504 / 1e-170 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10013014 [exp] 452 / 4e-153 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10029151 [exp] 451 / 9e-153 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10011098 [exp] 454 / 6e-151 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 451 / 5e-149 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013013 [exp] 453 / 6e-149 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) Lus10043219 [exp] 442 / 1e-146 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.017G110400.2 pacid=42814603 polypeptide=Potri.017G110400.2.p locus=Potri.017G110400 ID=Potri.017G110400.2.v4.1 annot-version=v4.1 ATGGCTTCCTTAACACCTTCACCAGATTCTTCCCCCTCTTTAATACCAATCTCTATTTCACCACCATCACCACCAGATTCTACAACCAATTCACCACCTC CTTCGACATCTCAGCCTGATCAGACCACTGACCCTCCAGTGCCTTCAACACCATCTAACCCTGCAACCCCACCACCAACCCCACCACCAACCCCACCTGC TGCTTCCCCACCAGCTCAACCACTATCACCACCACCATCACCAATAATTCCCTCAACACCATCTGCCCCACCACCATCACCCCCGGCATCCCCACCACAA GCCCCTCCAGCATTAACACCTCCCTCACCACCTGCTGCGCCTCCCCCTGCTTCTACTACTTCACCGCCCCCTCCGAATGAATCCCCTCCACCACCAGTAA GCACCTCCCCTCCTCCACAAGCCTCTCCAACACCCCCACCTCCCCTTCAAGCTGTTTCACCTTCTCCACCTCCTCCTGCAAATGTCCCGATACCCCCTTC TACAAATTCGCCTCCTCCGCCAACAGCAAAGTCCCCTGAAACCCCCCCTGCACCTCCTACAGTCACTACTCCAGCACCTAGTTCTCAATCTGATAGTCCT CCTCCAAAAACAAATTCTCCTCCTCCTCCAATACCCACATTGCCTTCACCACCTCCATCAGTTCCATCAACCTCATCAACACCTCCGTCAATATCTCCTC CTGCTCCTCCAGTTAATTCATCAGCAACAGGAAGTCCTACCTCACCCATTCCCTCTATCCCAACAGAGAAACCAACTGCTAGAGCAACTAATGACACCAA TGTCTCTGCGAATACCTCATCCAGCGGTCCAGGGGGTTCAAACACTGGAGGTGCAGTTGCAATAGGCATTGTGGTTGGGTTTGTAGCACTCAGTCTTCTA GTGATGGCTGTGTGGTTTGCACAAAAGCGAAAGAGAAGAAAAGGAGAAAATATTGGTTACACTATGCCTTCTCCATTTGCCTCCTCACAAAATTCAGATT CACTATTTCTAAAACCTTATCCTCCAGCTCCCTTGGTTGGCAGTCCTTCTGGCAGTGATTTCATCTATTCACCATCAGAGTCAGGTGTGATAAATAATTC AAGGTCATGGTTCACATATGAAGAACTTGTCCAAGCCACAAATGGGTTTTCAGCACAGAATCGTCTAGGCGAAGGTGGATTTGGTTGTGTATACAAAGGT GTCCTGGTTGATGGAAGAGAAGTAGCTGTGAAACAATTAAAGATTGGTGGTTCTCAAGGGGAGCGTGAATTCAGAGCAGAGGTTGAGATTATTAGTCGAG TGCATCATCGACATTTGGTTTCACTGGTGGGTTACTGTATATCCGAGCATCAAAGACTGCTTGTCTATGACTACCTTCCCAACGATACTCTTTATTACCA TTTGCACGGTGAAGGCAGGCCGCATATGGATTGGGCAACAAGGGTCAAGGTTGCTGTTGGTGCAGCTCGTGGCATAGCTTATCTGCATGAGGATTGCCAT CCACGAATTATTCACAGGGATATCAAGTCATCTAACATCCTTCTTGATGACAATTTTGAAGCTCAGGTTTCAGATTTTGGGCTTGCTAAGATAGCTCTGG AACTGGATTCAAATACACATGTATCCACACGTGTGATGGGAACCTTTGGGTACATGGCTCCAGAGTATGCAACAAGTGGAAAGTTGACTGAAAAATCTGA TGTTTATTCATTTGGGGTTGTGCTTTTGGAGCTAATTACAAGCCGTAAGCCTGTGGATGCTTCTCAGCCAATAGGTGATGAAAGCCTCGTTGAATGGGCT CGACCATTGCTCACAACTGCGCTTGAAAATGAAGACTTTGAAGCATTGGTTGATCCAGAGCTGGAGAAGAACTATGTTCCAAGTGAAATGTTTCGGATGA TTGAGGCAGCTGCAGCTTGTGTGCGTCATTCAGCTGCAAAAAGGCCACGAATGAGTCAGGTGGTGAGAGCCTTGGACTTGTTAGATGAGTCATCGGATCT ATCTAACGGAATGAAACCTGGCCAAAGTGAAATATTTGATTCAAGACAACACTCTGCACAAATCAGAATGTTTCAGAGGTTGGCATTTGGTAACCAAGAC TATAGTTCAGGTTTTTTCGATCGCACTCAGAGTAGCTGGAGGAGTAGAGATCCTGGGGATTAA
AA sequence Show only first row Show all	>Potri.017G110400.2 pacid=42814603 polypeptide=Potri.017G110400.2.p locus=Potri.017G110400 ID=Potri.017G110400.2.v4.1 annot-version=v4.1 MASLTPSPDSSPSLIPISISPPSPPDSTTNSPPPSTSQPDQTTDPPVPSTPSNPATPPPTPPPTPPAASPPAQPLSPPPSPIIPSTPSAPPPSPPASPPQ APPALTPPSPPAAPPPASTTSPPPPNESPPPPVSTSPPPQASPTPPPPLQAVSPSPPPPANVPIPPSTNSPPPPTAKSPETPPAPPTVTTPAPSSQSDSP PPKTNSPPPPIPTLPSPPPSVPSTSSTPPSISPPAPPVNSSATGSPTSPIPSIPTEKPTARATNDTNVSANTSSSGPGGSNTGGAVAIGIVVGFVALSLL VMAVWFAQKRKRRKGENIGYTMPSPFASSQNSDSLFLKPYPPAPLVGSPSGSDFIYSPSESGVINNSRSWFTYEELVQATNGFSAQNRLGEGGFGCVYKG VLVDGREVAVKQLKIGGSQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYLPNDTLYYHLHGEGRPHMDWATRVKVAVGAARGIAYLHEDCH PRIIHRDIKSSNILLDDNFEAQVSDFGLAKIALELDSNTHVSTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITSRKPVDASQPIGDESLVEWA RPLLTTALENEDFEALVDPELEKNYVPSEMFRMIEAAAACVRHSAAKRPRMSQVVRALDLLDESSDLSNGMKPGQSEIFDSRQHSAQIRMFQRLAFGNQD YSSGFFDRTQSSWRSRDPGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Potri.017G110400 [exp]	0	1
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Potri.008G182766 [exp]	6.92	0.8456
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G224075 [exp]	9.16	0.8254
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Potri.002G156000 [exp]	11.13	0.7728
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Potri.001G177700 [exp]	12.48	0.8329
AT3G09280			unknown protein		Potri.004G029700 [exp]	16.52	0.7616
AT3G54070			Ankyrin repeat family protein ...		Potri.014G058100 [exp]	16.52	0.8100
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	17.32	0.7672
					Potri.012G066225 [exp]	20.73	0.8304
AT4G01810			Sec23/Sec24 protein transport ...		Potri.014G112600 [exp]	21.35	0.7665
AT1G30760			FAD-binding Berberine family p...		Potri.001G463550 [exp]	23.95	0.7829

Compare expression of checked genes

Potri.017G110400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.