Plant FIBer expression Database

Potri.017G110600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02420 532 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G104900
[exp]
580 / 0 AT3G02420 513 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034084
[exp]
530 / 0 AT3G02420 489 / 2e-174 unknown protein
Lus10003064
[exp]
406 / 5e-141 AT3G02420 372 / 2e-127 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF03661 TMEM33_Pom33 Transmembrane protein 33/Nucleoporin POM33
Representative CDS sequence
>Potri.017G110600.1 pacid=42813003 polypeptide=Potri.017G110600.1.p locus=Potri.017G110600 ID=Potri.017G110600.1.v4.1 annot-version=v4.1
ATGGGAGAAGAAAGGGAGGATCCACAGAAGCTTAAGAGGATAGCAGCGGCTGCTTTTGATTACGAGAACGACCCTAGATGGGCTGAGTACTGGTCCAACA
TCCTCATCCCTCCTCACCTGGCTTCTCGCTCTGATGTCATCGATCACTTCAAGCGCAAATTCTACCAACGCTACATCGACCCTGATCTAGTGGTGGAGGC
AATGTCTACAAATGGTTCATCTCAGTCGACAAAGTCATCTGGTTCATCCTCTTCATCATCAGCCCCTTCAAATGACCAGCCTCGACCACGCAATACAGGG
TCAACTACTAGAACCTCTGGGCCATCAGCTACTGCAGGTCAAAATCCAAGCCCTGTTCGCTGGGATCGACAAACCATACAATTTTCTATCAATGCTTGGG
TTTTCATTGTGGCTGTGCTTGCAATTATTCCCCTCGTACCTAAAAATCTTTCAAGTAGGGCATCTCGGCTGTCATTTATGGGCACTGCATGCTCATCTCT
GTATTCCTTATACGCACTACATGGGAGACCCAGAGCATGGAACTTGCAGGGTATTCAAGCTTACTTGCAGTCAATAATTGCGACCAAAGATTTTATCTAC
GTCATCTACTGCCTTACATTTGTCACTTCACATCTTTGCCTCAGATTTGCTTTAATTCCAATTTTGTGCCGATCACTGGAGCATGTTGCCAAATTCTTGA
GGTCTAATTTCAGTCGTTCCACCTTGTACAGGAAGTACCTTGAAGACCCTTGTGTATGGGTGGAGTCCAACACAACTACCCTCAACATTCTGTCCTCTCA
TTCCGAAATTGCACTTGGCTTCCTCTTAATTATTTCCCTGTTGTCGTGGCAACGCAACATAATACAAACATTCATGTATTGGCAGCTATTGAAGCTCATG
TATAATGCCCCTGTGACTGCTGGTTACCATCAGAGCGTGTGGGCAAAGATTGGAAGGATCGTCAATCCGCTTATCCACCGTTACTGCCCATTCTTGAACA
CTCCACTCTCTGCTGTTCAAAGATGGTGGTTTAGGTAA
AA sequence
>Potri.017G110600.1 pacid=42813003 polypeptide=Potri.017G110600.1.p locus=Potri.017G110600 ID=Potri.017G110600.1.v4.1 annot-version=v4.1
MGEEREDPQKLKRIAAAAFDYENDPRWAEYWSNILIPPHLASRSDVIDHFKRKFYQRYIDPDLVVEAMSTNGSSQSTKSSGSSSSSSAPSNDQPRPRNTG
STTRTSGPSATAGQNPSPVRWDRQTIQFSINAWVFIVAVLAIIPLVPKNLSSRASRLSFMGTACSSLYSLYALHGRPRAWNLQGIQAYLQSIIATKDFIY
VIYCLTFVTSHLCLRFALIPILCRSLEHVAKFLRSNFSRSTLYRKYLEDPCVWVESNTTTLNILSSHSEIALGFLLIISLLSWQRNIIQTFMYWQLLKLM
YNAPVTAGYHQSVWAKIGRIVNPLIHRYCPFLNTPLSAVQRWWFR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02420 unknown protein Potri.017G110600
[exp]
0 1
AT5G06660 Protein of unknown function DU... Potri.016G060300
[exp]
1.00 0.8514
AT3G02090 MPPBETA Insulinase (Peptidase family M... Potri.004G118900
[exp]
1.41 0.8338
AT1G22920 CSN5A, JAB1, AJ... ARABIDOPSIS JAB1 HOMOLOG 1, CO... Potri.018G006100
[exp]
2.23 0.7738 AJH1.3
AT1G50370 AtFYPP1 flower- specific, phytochrome-... Potri.008G003200
[exp]
2.44 0.7868 ATFYPP3.2
AT4G17650 Polyketide cyclase / dehydrase... Potri.002G126000
[exp]
3.46 0.7649
AT3G22630 PRCGB, PBD1 20S proteasome beta subunit D1... Potri.010G084800
[exp]
8.71 0.7753 PBD2.2
AT4G24820 26S proteasome, regulatory sub... Potri.012G093500
[exp]
10.58 0.7628
AT4G21105 cytochrome-c oxidases;electron... Potri.001G460200
[exp]
11.22 0.7476
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Potri.005G253400
[exp]
12.00 0.7189
AT3G12160 AtRABA4d ARABIDOPSIS THALIANA RAB GTPAS... Potri.001G270100
[exp]
14.96 0.6995 RAB11.15

Potri.017G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.