Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15860 541 / 0 ICME, ATPCME Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) AT3G02410 523 / 0 ICME-LIKE2 Isoprenylcysteine methylesterase-like 2, alpha/beta-Hydrolases superfamily protein (.1.2) AT1G26120 506 / 1e-177 ICME-LIKE1 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G104800 [exp] 669 / 0 AT5G15860 547 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Potri.010G132200 [exp] 507 / 2e-178 AT1G26120 578 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104000 [exp] 45 / 7e-05 AT2G03550 327 / 8e-112 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104100 [exp] 44 / 0.0001 AT2G03550 330 / 6e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G142400 [exp] 44 / 0.0002 AT2G03550 331 / 2e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G127600 [exp] 44 / 0.0002 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034083 [exp] 559 / 0 AT5G15860 569 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10003065 [exp] 540 / 0 AT5G15860 554 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10035064 [exp] 534 / 0 AT1G26120 613 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10017889 [exp] 533 / 0 AT1G26120 608 / 0.0 Isoprenylcysteine methylesterase-like 1, alpha/beta-Hydrolases superfamily protein (.1) Lus10034399 [exp] 521 / 0 AT5G15860 561 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10019156 [exp] 518 / 0 AT5G15860 558 / 0.0 Isoprenylcysteine methylesterase, prenylcysteine methylesterase (.1.2) Lus10017587 [exp] 44 / 0.0002 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10002907 [exp] 43 / 0.0004 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10033548 [exp] 42 / 0.0005 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07859 [poplar] [flax] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.017G110700.3 pacid=42813269 polypeptide=Potri.017G110700.3.p locus=Potri.017G110700 ID=Potri.017G110700.3.v4.1 annot-version=v4.1 ATGACGTCTGCCCATCCATTTTCAGCCATTTCGTTTACCCACTGCTTCAAGCTCAAACGTTGTCTCTCCAACAACAACACACTTCATCACCATCATCCAA ATCTAATCGCCACGATGTCGTCATCAGATCCGGCACCAAATCGCAATCGTTCATTCGGAACTGAATCCAAACTGAGCGGCAACGATCAAACGGACGCTAA ACCGCTTCTTTCTCTGTATTCCAGTAGTAGCGGTAGTTTTAAACAAATGCCGCGGCGACGAGTTCCCGGTAAGCCGGATATGCGGCGATCTTATAGTCGA GATATCGGTCACGCTGCCGCTGAGACTTACATGATCACTCGCCTCACCATCACTCTTCTCCGATACCTCGGGGTAGGCTACCGGTGGATCACGAGATTAG CAGCACTTGGTTTTTATGCTGCTCTACTTATGCCTGGCTTTCTTCAAGTTGCATATTATTATTTCTTCTCAAGTCAGGTTCGACGGAGTATTGTTTATGG TGATCAACCAAGAAACAGGTTGGATCTCTATTTACCAAAAACATTAGATGGACCAAAGCCAGTTGTGGCATTTGTCACAGGTGGTGCCTGGATTATTGGG TATAAAGCATGGGGATGTCTACTAGGACAACAGCTGGCAGAAAGAGACATCATAGTGGCATGTATTGATTACAGAAATTTTCCCCAGGGAACCATTGGTG ATATGGTTGCAGATGCATCTCAGGGGATCTCTTTTATTTGTAACAACATCTCTGAATATGGAGGTGACCCTAACAGGATCTATCTAATGGGACAATCCGC TGGTGCACACATTTCTGCTTGTGCCCTCTTGGAGCAAGCAATAAGAGAAGCTAAGGGAGAGGAGGGGATCTCCTGGAGTGTCTCCCAGATAAAGGCATAT TTTGGTTTATCTGGAGGGTACAATTTATGCAAATTAGTCGATCATTTCAACAACCGTGGCCTGTACCGTGCTCTTTTTCTAAGCATGATGGAAGGTGAAG AATCCTTGCAATCTTTTTCTCCTGAACTTAGAATAGAAGACCCAAGCATTGGAAATGCTGTTTCTCTTCTGCCTCCTATTATTCTCTTTCATGGAACAGC AGATTATTCAATACCATCATCTGCCAGTATAGATTTTGCAGCTGCTCTTCAAAGGTTAGGAGCACAAGCTGAGCTAATTTTATTTGATGGAAAAACCCAT ACAGACTTGTTTCTTCAAGATCCTCTAAGAGGCGGTAAGGATGAAATGTTCAGCCATCTGGTCGCTGTGATACATGCTGGTGATGAGGAAGCTCTAGCCA AGGATGCTACGGCACCTCCGAGAAGGCGACTAGTTCCCGAGGTTCTGCTAAGGATGGCCAGCCATATCAGCCCTTTCTAA
AA sequence Show only first row Show all	>Potri.017G110700.3 pacid=42813269 polypeptide=Potri.017G110700.3.p locus=Potri.017G110700 ID=Potri.017G110700.3.v4.1 annot-version=v4.1 MTSAHPFSAISFTHCFKLKRCLSNNNTLHHHHPNLIATMSSSDPAPNRNRSFGTESKLSGNDQTDAKPLLSLYSSSSGSFKQMPRRRVPGKPDMRRSYSR DIGHAAAETYMITRLTITLLRYLGVGYRWITRLAALGFYAALLMPGFLQVAYYYFFSSQVRRSIVYGDQPRNRLDLYLPKTLDGPKPVVAFVTGGAWIIG YKAWGCLLGQQLAERDIIVACIDYRNFPQGTIGDMVADASQGISFICNNISEYGGDPNRIYLMGQSAGAHISACALLEQAIREAKGEEGISWSVSQIKAY FGLSGGYNLCKLVDHFNNRGLYRALFLSMMEGEESLQSFSPELRIEDPSIGNAVSLLPPIILFHGTADYSIPSSASIDFAAALQRLGAQAELILFDGKTH TDLFLQDPLRGGKDEMFSHLVAVIHAGDEEALAKDATAPPRRRLVPEVLLRMASHISPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15860		ICME, ATPCME	Isoprenylcysteine methylestera...		Potri.017G110700 [exp]	0	1
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Potri.007G026400 [exp]	1.41	0.7927	Pt-SDH1.1
AT5G13420			Aldolase-type TIM barrel famil...		Potri.001G068200 [exp]	3.74	0.7797
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.009G055100 [exp]	7.34	0.7717
AT2G16460			Protein of unknown function (D...		Potri.009G123700 [exp]	10.39	0.7469
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Potri.001G338400 [exp]	15.19	0.7443	SDH2.1
AT5G16880			Target of Myb protein 1 (.1.2....		Potri.013G082500 [exp]	16.24	0.7565
AT3G17950			unknown protein		Potri.012G045700 [exp]	18.16	0.7660
AT5G11650			alpha/beta-Hydrolases superfam...		Potri.018G045800 [exp]	22.49	0.7266
AT1G53820			RING/U-box superfamily protein...		Potri.003G073300 [exp]	28.46	0.7139
AT2G38710			AMMECR1 family (.1.2)		Potri.010G240000 [exp]	28.77	0.6973

Compare expression of checked genes

Potri.017G110700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.