Plant FIBer expression Database

Potri.017G111050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G111050.1 pacid=42813083 polypeptide=Potri.017G111050.1.p locus=Potri.017G111050 ID=Potri.017G111050.1.v4.1 annot-version=v4.1
ATGTTTTGGATTTATATCTTCCCTGTTTCGTTTGCTTTTCCTCTGGTTCTTCCTCTTCGTCTGTTTTTCCTTGCTACTGGTATTCGTGTTTTTTTTCCAA
TTCGTCTGAGCTTGATCACGGATCCTGCGGTTTTGAAAGAGGTTCAACAGTCCCTCTCCCCTGCTTCCTTCTCCCTGTGCTACCCAGTGCGCATCCCTCT
GTTTCCTTTCTTTATTCTCCCTGTTCTTTTTTTCTGGTGTGTCTGCGTCCTCCTCGTCTCCTTTCCCCTCTGTTCTTTTCTCTTTCCTTTTTTCCCACCC
TGTTTTTTTTTTCTGCTGTCTCCTTGCTTTCTCCTCCCTTTTTTTCTCCCCTTTGCTCGATCCTTCCTCTGGCTTTTATAG
AA sequence
>Potri.017G111050.1 pacid=42813083 polypeptide=Potri.017G111050.1.p locus=Potri.017G111050 ID=Potri.017G111050.1.v4.1 annot-version=v4.1
MFWIYIFPVSFAFPLVLPLRLFFLATGIRVFFPIRLSLITDPAVLKEVQQSLSPASFSLCYPVRIPLFPFFILPVLFFWCVCVLLVSFPLCSFLFPFFPP
CFFFLLSPCFLLPFFLPFARSFLWLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G111050
[exp]
0 1
AT1G10340 Ankyrin repeat family protein ... Potri.018G042200
[exp]
1.73 0.9096
AT3G18690 MKS1 MAP kinase substrate 1 (.1) Potri.007G110100
[exp]
2.23 0.9165
Potri.012G124788
[exp]
4.89 0.8940
AT1G80300 ATNTT1 nucleotide transporter 1 (.1) Potri.001G175200
[exp]
4.89 0.9063 AATP1.1,PtrAATP1
AT1G76250 unknown protein Potri.002G011400
[exp]
5.00 0.9061
AT1G08450 AtCRT3, PSL1, E... PRIORITY IN SWEET LIFE 1, EMS-... Potri.019G055200
[exp]
5.47 0.8852
AT5G48380 BIR1 BAK1-interacting receptor-like... Potri.010G178050
[exp]
6.32 0.9152
AT1G34420 leucine-rich repeat transmembr... Potri.013G114200
[exp]
8.77 0.8989
AT1G13580 LOH3, LAG13 LAG One Homologue 3, LAG1 long... Potri.015G055000
[exp]
9.00 0.8935
AT3G27320 alpha/beta-Hydrolases superfam... Potri.008G180500
[exp]
12.00 0.9038

Potri.017G111050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.