Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38600 400 / 5e-133 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) AT1G67210 357 / 4e-118 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1), Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G104400 [exp] 803 / 0 AT5G38600 404 / 3e-134 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Potri.011G047600 [exp] 44 / 0.0004 AT4G21660 737 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Potri.004G039000 [exp] 43 / 0.0006 AT4G21660 740 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003067 [exp] 448 / 6e-151 AT5G38600 342 / 5e-111 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Lus10034080 [exp] 369 / 9e-118 AT5G38600 280 / 1e-86 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1) Lus10011207 [exp] 44 / 0.0004 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2) Lus10018475 [exp] 43 / 0.0007 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04046 [poplar] [flax] PSP PSP
Representative CDS sequence Show only first row Show all	>Potri.017G111300.1 pacid=42813804 polypeptide=Potri.017G111300.1.p locus=Potri.017G111300 ID=Potri.017G111300.1.v4.1 annot-version=v4.1 ATGGAAACAGATGATATGATTGGCCTCCCTGGTTCTATTGATTTTGGATATAAAAATGAGAATGATGAGCTTTCCAAGTCTGATTTTGGGCCAAGTGAAT CTCGCTCTCAACCATGTAGTAATGATGGTAAAGAAAGTAAGGATGATGAAGAGGGTTTGGGGCTCTGTGAAGGTGTGGTTGGAAATGAAGAAGGTATAGT CGATCCAGGGTGTTCAGGGCTTAATGTAGGTGATACTGGAACTGAAGAAGCTGCAACAGATCAGAGTAATTTGGTGCTTGAGGAACGTGATATTGGATCT AAAGGTGTCCAGTTTGCAGTGGAAACAGAGGCTGACATGGATTTGGTAGTTTCTCCTGTCAGACAAGTGAATCTTGATGTGGTTGATGCTGTTATAGTTT CCAAGAAGCCAGATATTTCCAGCATCATAGGGAACGTTGAGGACTGTTTCCTTGATACACAAAATAATAGTCTTGTCCAACAAGGCAAGGTGGATGGCAG TCATATATCAGGCGTTAAGAGAAAAAGGATGGCATATGATGAACAGCAACCTTCAGTGCATGTCATGTATAACTCCTTAACAAGAGCTAGCAAACAAAAG CTTGAGGAACTGTTACAACAGTGGTCAGAATGGCATGCTCAACAGAATTCATCTCATGATTCTGATGAAATGTTACAATCTGGTGAAGACACTTACTTTC CTGCTCTACGTGTTGGCATGGAGAAGTCCTCTGCAGTGTCCTTCTGGATTGAGAACCAAGCAAGGAAACAACAAGACAATGATTTAATTCTTCAACATAG TAATTTTGTGCCTCTATATGATCGTGGATATGTGTTGGGTTTGACTTCAGCAGATGGTCCAATTAATGTAGAAGGAGGCTTGGAGATAGTGGATGCTGCT GCACGTTGTTTTAACTGTGGTGCATACAACCATTCTTTGAAGGAATGCCCAAAACCTCGTGATAATGCTGCTGTTAATAATGCTCGCAAACAACACAAGT TCAAGCGAAATCAGAATTCTAGTTCCCGCAATCCAACACGCTATTATCAGAGCTCTTCTGGTGGCAAGTATGATGGTTTAAAGCCAGGTTCTCTTGACAC TGAAACACGACAACTTTTGGGTCTTGGGGAGCTTGATCCTCCACCATGGCTTAACAGAATGCGAGAGCTGGGATACCCACCAGGATATCTAGATCCCGAT GATGAGGATCAGCCTTCTGGGATCACAATATTTGATGATGGAGATGTAGAGGAAGAACAGGAAGATGGGGAGATTATGGAAACAGACCATCCTGAACCAC CAAGGAAAATGTCAGTTGAATTTCCTGGAATAAATGCACCAATTCCAGAAAATGCAAATCAAAGATTTTGGGAAGTGGGGCCTTCAAGTTCTGATCCATT TAGGCACCGATCACGCCATAGATCAAACCATTCCTCAGAAGCTACAGGCAGATGGCATCATCATGAACAGAGACAGTATAGGGATTTCATTAACGATGGG CCTCCAGGTGTTGATCCCGTGTTTAGTCCATCTATGTCCAGTTATCCTCCAAGGTATGGTCATCATGACTCTAGTTACAGTTCTGACAGCCCTAGAGATC TGAGCCCTGCCTTTGGGAGGTCCAATTCCGATAGAGGGAGGGGTGCTTTGGTATATGAGGATTTTGCAAGTCAAGGTTCTTCATCCTACTCATCCTCACG GAAACGTTCTTCGCCACAGAATATTGGTTCAGCCAGATACGAGACTGATAACAGCCGGGATGACTATGACACGGATTATTCATATCGGGATTATTCATTT CGGAGTGAGTATGACAACGATCGCTATCGCCGTCGTAGTAGGAGGTAA
AA sequence Show only first row Show all	>Potri.017G111300.1 pacid=42813804 polypeptide=Potri.017G111300.1.p locus=Potri.017G111300 ID=Potri.017G111300.1.v4.1 annot-version=v4.1 METDDMIGLPGSIDFGYKNENDELSKSDFGPSESRSQPCSNDGKESKDDEEGLGLCEGVVGNEEGIVDPGCSGLNVGDTGTEEAATDQSNLVLEERDIGS KGVQFAVETEADMDLVVSPVRQVNLDVVDAVIVSKKPDISSIIGNVEDCFLDTQNNSLVQQGKVDGSHISGVKRKRMAYDEQQPSVHVMYNSLTRASKQK LEELLQQWSEWHAQQNSSHDSDEMLQSGEDTYFPALRVGMEKSSAVSFWIENQARKQQDNDLILQHSNFVPLYDRGYVLGLTSADGPINVEGGLEIVDAA ARCFNCGAYNHSLKECPKPRDNAAVNNARKQHKFKRNQNSSSRNPTRYYQSSSGGKYDGLKPGSLDTETRQLLGLGELDPPPWLNRMRELGYPPGYLDPD DEDQPSGITIFDDGDVEEEQEDGEIMETDHPEPPRKMSVEFPGINAPIPENANQRFWEVGPSSSDPFRHRSRHRSNHSSEATGRWHHHEQRQYRDFINDG PPGVDPVFSPSMSSYPPRYGHHDSSYSSDSPRDLSPAFGRSNSDRGRGALVYEDFASQGSSSYSSSRKRSSPQNIGSARYETDNSRDDYDTDYSYRDYSF RSEYDNDRYRRRSRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38600			Proline-rich spliceosome-assoc...		Potri.017G111300 [exp]	0	1
AT3G18370		NTMCTYPE3, ATSY...	C2 domain-containing protein (...		Potri.012G056000 [exp]	1.73	0.9015
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.012G088200 [exp]	2.44	0.8807
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032700 [exp]	3.87	0.8708
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.007G106800 [exp]	4.24	0.8493	Pt-MAP3.2
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015900 [exp]	4.24	0.8897	Pt-EIL3.2
AT1G78310			VQ motif-containing protein (....		Potri.002G099900 [exp]	7.74	0.8484
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	8.36	0.8670
AT2G42450			alpha/beta-Hydrolases superfam...		Potri.005G222000 [exp]	9.79	0.8510
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	11.13	0.8762
AT3G51580			unknown protein		Potri.019G058400 [exp]	11.66	0.8661

Compare expression of checked genes

Potri.017G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.