Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67230 793 / 0 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 473 / 2e-147 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 437 / 2e-134 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1) AT5G65770 224 / 6e-60 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 216 / 3e-57 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G114800 [exp] 622 / 0 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.012G034300 [exp] 244 / 2e-66 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003075 [exp] 919 / 0 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 809 / 0 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 749 / 0 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034383 [exp] 517 / 4e-163 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034263 [exp] 513 / 1e-161 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034075 [exp] 502 / 1e-159 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10019257 [exp] 199 / 6e-52 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 196 / 6e-51 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G111400.4 pacid=42814592 polypeptide=Potri.017G111400.4.p locus=Potri.017G111400 ID=Potri.017G111400.4.v4.1 annot-version=v4.1 ATGTTTACGCCACAGAAGAAAGTGTGGTCGGGGTGGTCGTTGACGCCGAGAAGCGAAGCGGGTCAAAAGAATGGAAGCGAGTCCGGGTCGGATCCGAAGG GAAAGAGTGTGGGTTTTGTTGAACAAGTGACGCCTAATGGAGTGCGACCCAATTTGGACGGTGAATATTTGGCGGATAAGGTTTCAAAGCTTGAGAATGA GCTATTTGAGTACCAGTACAATATGGGGCTTCTCTTGATTGAGAAGAAGGAGTGGGGTTCTAAGCATGAAGAACTCATGCAAGCATTTGCAGAAGCAACA GAAGCTGTCAAACGGGAACAAGCTGCACATTTGATTGCACTTTCTGATGCTGAAAAGCAGGAAGAGAATTTGAGAAGAGCCTTGGGTGTTGAGAAACAAT GTGTGCTTGATTTAGAGAAGGCAGTGCGCGAGATGCGTTCAGAAAATGCAGACATTAAATTTACAGCCGATTCAAAACTGGCTGAAGCAAATGCATTAGT TATGAGTATTGAAGAGAAGTCTCTGGAGGTAGAGGCGAAATTGCGTGCTGCTGATGCCAAGCTTGCAGAAGTGAGCAGAAAGAGTTCTGAGATTCAGAGG AAATTGCTGGATGTGGAATCTCGAGAAAGTGCTCTTCGAAGGGAGCGCTTGTCCTTCATTGCAGAGAAAGAGGTGTACGAGACCACTTTTTCTAAGCAAA GGGAGGACTTGCAAGAATGGGAGAAGAAATTACAAGAAGGAGAAGAGAGGCTATCAAAGAGTCAAAGAATTATTAACCAAAGAGAAGAAAGGGCAAATGA AAACGATAGGATCCTTAAGCAGAAAGAGAAGGATCTTGAAGAGGCTCAGAAGAAGATTGAGGATGCAAACTCAATTTTGAAGAGGAAAGAAGATGATATT AGTAACCGGCTCACTAATCTAACTATAAAGGAAAAGGAATTTGATGCTACAAGAAAGAAATTAGAGGTGAAAGAAGTAGAGTTACGTGTGCTAGAAGAAA AGCTAAATGAGAGAGAGAGAGTTGAGATTAAGAAGCTAACTGATGAACACAATGCCATTTTGGATGTAAAGAAGCATGAATTTGAGTTGGAAGCTGAACA AAAGAAGAAGTCTTTGGATGAGGATCTCAAAAACAAGGTAATTGAGCTAGAAAAAAGGGAAACTGAAATCAACCACAAGGAAGAGAAAGCTGCAAAACGA GAGCAGGCATTGGATAAGAAACTGGAGAAGTGTAAGGAGAAAGAGAATGAATTTGAATCAAAGTCAAAATCTCTGAAGGAGAGGGAGAAGGCCATCAGAT CTGAACAGAAGAATTTGGAGGGAGAGAAAAACCAACTGGAATCTGCTAAAGAGAATTTTCTGAATCTTAAAGCTGAACTGGAAAAAACCAGGGCTTCAAA TGAAGAACAGCTTTTGAAAATTCACGAAGAGAAGGAGCGTCTCAAAGTGAGCGAGGAAGAGAGGTCTGAGTATGCCCGCTTGCAAGCTGAGCTTAAGGAG GAAATAAATAAATGTAGGCTTCAGGAAGAGCTGCTTTTGAAGGAGGCTGATGATTTAAAGCAGCAAAAAGGGAATTTTGAGAGAGAGTGGGAAGATCTGG ATGAAAAAAGGGCTGAGGCTGAGAAAGAGTTGAAGAGCATTCATGAACAGAAGGAAAAATTTGAAAAATATAGACTCTCTGAAGAAGAAAGAATAAGAAA TGAAAGAAAGGAAACAGAAAACTACATAAAAAGAGAGCTGGAAGCTCTGCAAGTGGCCAAGGAATCATTTGAGGCCAACATGGAGCATGAGCGGTCTGTG ATGGCTGAGAAAGCTCAAAATGAGAGAAACCAGATGCTACATAGCATCGAGATGCAGAAGACTGAGCTTGAGAATGAATTACAAAAAAGGCAGGAGGAGA TGGACAGGCTTTTGCAAGAGAAGGAGAAACTGTTTGAGGAAGAGAGAGAGAGAGAATTTAAGAATATTAATTTCTTAAGAGATGTAGCTAGAAGAGAAAT GGAAGATATGAAACTGGAAAGGCTTAGGATAGAGAAAGAGAAGCAAGAAGTTGATGAAAAAAAAAGGCATCTTCAAGAGCAACAAATTGAAATGCGAGAA GATATTGATAAGCTGGGCAATCTTAGTAGAAAGTTGAAGGACCACAGGGAGCAATTTATTAAAGAGAAAGAGCGTTTCATTGTATTTGTTGAGCAAAACA AGGGTTGCAAAAACTGTGGTGAATTGACCTCTGAGTTTGTGCTTTCTGATTTGATATCTTCACAAGAAATTGAGAAAGCTGACGCCCTTCCTACATCAAA GTTGGTTAATAATCATGTGACCACAGATGATGGAAATCCAGCTGCTTCTGAGAAGCATGATAGCGAGATGTCTCCCACTCTAGCTCATTCTGTATCTCCA GTTTCTTGGCTGCGCAAGTGCACATCAAAGATACTTAAGTTCTCTGCTGGTAAAAGGATTGAGCCTGCTGCTTTACAAAATTTGACTGATGGCACACCCC TGTCTGGTGAGCAAGTTAATGCAGAAGAAATGTCAAAAAGATTAGATTTTACTGAAAATGAACCAGAGCTATCTTTTGCAATTGTCAATGATTCACTTGA TGCCCAGAGGGTACTCTCTGATACAAGCATCAGAGAGGTTGAAGCTGGACATGATTTATCGATTAATGATCAGAGCAACAATAATGGTACAGCACCAGAA ATTCAGGAAGATTCCCAACCTTCTGGATTAAAGCATGATCCCCAACCTCGTAAAAGGGGTAGGCCAAGAGTTAGCAGAACACGCTCTGTCAAGGAAGTTG TCCAAGATGCCAAAGCTCTCCTGGGGGGTGCTTTGGAATTAAATGAGGCTGAAGATTCTGGCCATCTGAAATCGGAAAGCCGTGATGAATCAAGTCTTGC TGATAAAGGAGGTCCAAGAAATGCCCGGAAGCGGAATCGAACTCAGACATCTCAAATTTCAGTGAGTGACCGTTACGGTGATGACAGTGAAGGTCATTCT GATAGTGTCACTGCTGGTGATCGCAGGAAGAGACGGCAAAAGGTTGTTCCCAATCAAACTCAAGGCCAAACACAATATAATCTTCGGCGACGCGAACTTG GAGTCGCTGTTGTAACTGTTAAAGCCTCATCAAACCTGAACAATGAAAAGGAGAAAGAGGATGATGGTGTTAGTAGTCCACAGGATGGAAATCTATTGAG AAGTGCTCCAGCAGCTTCTGCAGGGGCTGCCAGTGAGAATGGGGAAAGCATGCACTTTGCAAGGTGTGCAAATATTATGGACACTCTGGACGGTGATGGC AGTGCAAGAAGGATGGATGAGAATGCAGCACTGAGTGAAGAGATAAATGGAACGCCAGAAGGGGCTGGGGAGTATGGTATTGCAGATGAGAACAGAAGTG AAACCCCTCGAGGTGAAAATGAAGATGAGGATGAAGATGATGACGAGGAAGAGTCTCTGCATCCTGGTGAAGTCTCAATAGGAAAGAAGCTCTGGACTTT CTTGACGACGTAA
AA sequence Show only first row Show all	>Potri.017G111400.4 pacid=42814592 polypeptide=Potri.017G111400.4.p locus=Potri.017G111400 ID=Potri.017G111400.4.v4.1 annot-version=v4.1 MFTPQKKVWSGWSLTPRSEAGQKNGSESGSDPKGKSVGFVEQVTPNGVRPNLDGEYLADKVSKLENELFEYQYNMGLLLIEKKEWGSKHEELMQAFAEAT EAVKREQAAHLIALSDAEKQEENLRRALGVEKQCVLDLEKAVREMRSENADIKFTADSKLAEANALVMSIEEKSLEVEAKLRAADAKLAEVSRKSSEIQR KLLDVESRESALRRERLSFIAEKEVYETTFSKQREDLQEWEKKLQEGEERLSKSQRIINQREERANENDRILKQKEKDLEEAQKKIEDANSILKRKEDDI SNRLTNLTIKEKEFDATRKKLEVKEVELRVLEEKLNERERVEIKKLTDEHNAILDVKKHEFELEAEQKKKSLDEDLKNKVIELEKRETEINHKEEKAAKR EQALDKKLEKCKEKENEFESKSKSLKEREKAIRSEQKNLEGEKNQLESAKENFLNLKAELEKTRASNEEQLLKIHEEKERLKVSEEERSEYARLQAELKE EINKCRLQEELLLKEADDLKQQKGNFEREWEDLDEKRAEAEKELKSIHEQKEKFEKYRLSEEERIRNERKETENYIKRELEALQVAKESFEANMEHERSV MAEKAQNERNQMLHSIEMQKTELENELQKRQEEMDRLLQEKEKLFEEEREREFKNINFLRDVARREMEDMKLERLRIEKEKQEVDEKKRHLQEQQIEMRE DIDKLGNLSRKLKDHREQFIKEKERFIVFVEQNKGCKNCGELTSEFVLSDLISSQEIEKADALPTSKLVNNHVTTDDGNPAASEKHDSEMSPTLAHSVSP VSWLRKCTSKILKFSAGKRIEPAALQNLTDGTPLSGEQVNAEEMSKRLDFTENEPELSFAIVNDSLDAQRVLSDTSIREVEAGHDLSINDQSNNNGTAPE IQEDSQPSGLKHDPQPRKRGRPRVSRTRSVKEVVQDAKALLGGALELNEAEDSGHLKSESRDESSLADKGGPRNARKRNRTQTSQISVSDRYGDDSEGHS DSVTAGDRRKRRQKVVPNQTQGQTQYNLRRRELGVAVVTVKASSNLNNEKEKEDDGVSSPQDGNLLRSAPAASAGAASENGESMHFARCANIMDTLDGDG SARRMDENAALSEEINGTPEGAGEYGIADENRSETPRGENEDEDEDDDEEESLHPGEVSIGKKLWTFLTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Potri.017G111400 [exp]	0	1
AT5G53440			unknown protein		Potri.015G014800 [exp]	1.00	0.9468
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.015G024400 [exp]	2.00	0.9381
AT1G17070			GC-rich sequence DNA-binding f...		Potri.013G076000 [exp]	2.44	0.9371
AT5G12400			DNA binding;zinc ion binding;D...		Potri.001G254300 [exp]	2.82	0.9270
AT5G08450			unknown protein		Potri.004G135800 [exp]	3.60	0.9009
AT3G51650			unknown protein		Potri.006G107500 [exp]	5.00	0.9232
AT3G43590			zinc knuckle (CCHC-type) famil...		Potri.009G155500 [exp]	5.00	0.8779
AT4G14920			Acyl-CoA N-acyltransferase wit...		Potri.010G087700 [exp]	6.48	0.9139
AT3G26560			ATP-dependent RNA helicase, pu...		Potri.012G034200 [exp]	6.70	0.9045
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	6.70	0.8967

Compare expression of checked genes

Potri.017G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.