Plant FIBer expression Database

Potri.017G111800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38640 775 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
AT1G48970 615 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
AT2G44070 559 / 0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
AT1G72340 80 / 7e-16 NagB/RpiA/CoA transferase-like superfamily protein (.1)
AT1G53900 76 / 4e-14 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
AT1G53880 76 / 4e-14 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
AT2G05830 52 / 7e-07 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G103700
[exp]
1020 / 0 AT5G38640 792 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Potri.012G059300
[exp]
695 / 0 AT5G38640 693 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Potri.010G068600
[exp]
85 / 3e-17 AT3G07300 482 / 3e-170 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3)
Potri.003G072100
[exp]
79 / 2e-15 AT1G53900 587 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Potri.001G163300
[exp]
78 / 5e-15 AT1G53900 589 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Potri.006G219900
[exp]
55 / 9e-08 AT2G05830 526 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027234
[exp]
653 / 0 AT5G38640 704 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Lus10038944
[exp]
651 / 0 AT5G38640 694 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1)
Lus10037451
[exp]
76 / 4e-15 AT1G53900 479 / 6e-172 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Lus10003938
[exp]
76 / 2e-14 AT1G53900 597 / 0.0 Eukaryotic translation initiation factor 2B (eIF-2B) family protein (.1)
Lus10008417
[exp]
57 / 2e-08 AT2G05830 543 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
Lus10001970
[exp]
56 / 4e-08 AT2G05830 538 / 0.0 NagB/RpiA/CoA transferase-like superfamily protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0246 ISOCOT_Fold PF01008 IF-2B Initiation factor 2 subunit family
Representative CDS sequence
>Potri.017G111800.20 pacid=42814329 polypeptide=Potri.017G111800.20.p locus=Potri.017G111800 ID=Potri.017G111800.20.v4.1 annot-version=v4.1
ATGGACCCTCGGCGAGCCCCAAGAACCGTAAGCGACCCGAAGGTCCGTAAAGTCGGGTTTTTTACTGACCCACCAGACCGTTCTCTATGGGGTCCACCCG
ACCACCCAATCTCCTCCTTCCCCACTTCTCCTCCTTCTATCGTCGACAGCTCCCCTCCTTCGGCCGGAAACTCTCTCTCTCCTGTCATGATCCCTCCTCC
TCGCCATTCCTCCGCCACTCTCTCTCCTCTCCGCCGTGACTCCGCTGAATTCTTCCCCCCTCCTGTTTCTCCCACCGCCTCCTCTTTATCCGATGATGTG
GCGTCGGCGATGATGCGGAGGGGTGTTGCTGCTGCTTCGAGTAGCTTGCCGGGAGGGTTAGGGTTTGATATTGCGGCGGTTAAATCAGCGGCGAGTAGTG
TTCCCGCGAGTGGATTGACTACGGTCTCGGTTGTTAACAATTTACCTATTGGTATTTCTGAGAAGGGTGGCGGGGTGGCGGTGGAAATGCAAAATGATCA
ATCTTCACGTTCGAAGTCATTGAAAGAGAAAACTACAAAAGCAGAGAGGCGTGCACTTCAAGAAGCTCAACGAGCTGCGAAAGCCGCTGCCAAAGCTGAA
GGTGGTAAGACACCTGCTGCTGCATCTGGGGCTGCAGCTTCTGCGAAGTCAGCTAAATCTGTGAAGCCGCCTTCACAGAAGAATGATAGTGCTACAGTTG
CAGTTTCGGAGAAGAAGGGAGGTGATAGGCCACCCGAAAAGGATAGAAAGAAGGAAGTCCCCCAACCACGTATGCAATATGATGACAAGAGTCGGGTGGA
AAAGGCAAAGAGGCGTGCTGTGGTAAAGCAAACAGAAGCTAGGAATAGAGTTGAGTTGTTCAGGCATTTACCTCAATATGAACGTCGAACTCAGCTTACT
GAACTTGAGTCCAAATTCTTTGAGCTTGACCCAATGCACCCAGCTGTCTACAAGGTTGGATTACAGTATTTGTCAGGAGACGTATGTGGTGGCAATGCTC
GCTGCATTGCAATGCTTCAAGCATTCCAAGAGGCCATTAAAGACTACTCAACACCCTCTGAAAAAACTCTTGCTCGAGACTTAACAGCAAAAATAGGTAG
TTACCTTTCTTTTCTTATCGAGTGCCGCCCCCTTTCAATCAGCATGGGGAATGCAATCAGGTTTCTAAAGAATCGAATTGCCAAGTTACCTTTGACTTTG
TCTGAAGCGGAAGTAAAAGCAACTCTTCATTCAGACATCGATAGATTCATAAATGAGAAGATCATACTTGCAGACAAGGTGATAGTCAAGCATGCTGTTA
CAAAGATCAGTGATGGTGATGTTCTACTTACATATGGATCGCCTTCTGCAGTTGAAATGGTACTATTGCATGCTCATGAACTTGGCAAACAGTTCCGTGT
TGTGGTAGTGGATTCTCGTCCAAAGCTTGAAGGGCAACTATTGCTTCATAGGTTGGTTGGAAAGGGAATCGACTGTACATACACTCATGTAAATGCCATT
TCTTATATCATGCATGAAGTCACTCGAGTTTTTCTGGGTGCATCGTCAGTCCTGTCCAACGGAACAGTTTACTCGAGAGTTGGGACTGCTTGTGTTGCTA
TGGTTGCTCATGCATTCCGTGTACCAGTATTAGTTTGTTGTGAAGCATATAAATTTCATGAAAGGGTACAGCTTGACTCATTATGTTCTAATGAGCTGGG
TGATCCAGATGTGATTTCAAAAGTTCGTGGAAGAGAGGATATCAACCTCCTTGATGGATCGACTGATAGTGAAAATCTCCAGCTTCTGAATTTGATTTAT
GATGCAACACCTTCAGATTACATTTCAATGATAATCACTGATTATGGCATGGTTCCACCTACGAGTGTGCCTGTCATAGTAAGAGATTATCAAAGAGAAC
ACTTGTGGATATAG
AA sequence
>Potri.017G111800.20 pacid=42814329 polypeptide=Potri.017G111800.20.p locus=Potri.017G111800 ID=Potri.017G111800.20.v4.1 annot-version=v4.1
MDPRRAPRTVSDPKVRKVGFFTDPPDRSLWGPPDHPISSFPTSPPSIVDSSPPSAGNSLSPVMIPPPRHSSATLSPLRRDSAEFFPPPVSPTASSLSDDV
ASAMMRRGVAAASSSLPGGLGFDIAAVKSAASSVPASGLTTVSVVNNLPIGISEKGGGVAVEMQNDQSSRSKSLKEKTTKAERRALQEAQRAAKAAAKAE
GGKTPAAASGAAASAKSAKSVKPPSQKNDSATVAVSEKKGGDRPPEKDRKKEVPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYERRTQLT
ELESKFFELDPMHPAVYKVGLQYLSGDVCGGNARCIAMLQAFQEAIKDYSTPSEKTLARDLTAKIGSYLSFLIECRPLSISMGNAIRFLKNRIAKLPLTL
SEAEVKATLHSDIDRFINEKIILADKVIVKHAVTKISDGDVLLTYGSPSAVEMVLLHAHELGKQFRVVVVDSRPKLEGQLLLHRLVGKGIDCTYTHVNAI
SYIMHEVTRVFLGASSVLSNGTVYSRVGTACVAMVAHAFRVPVLVCCEAYKFHERVQLDSLCSNELGDPDVISKVRGREDINLLDGSTDSENLQLLNLIY
DATPSDYISMIITDYGMVPPTSVPVIVRDYQREHLWI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G38640 NagB/RpiA/CoA transferase-like... Potri.017G111800
[exp]
0 1
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G271200
[exp]
4.69 0.8129
AT1G31480 SGR2 shoot gravitropism 2 (SGR2) (.... Potri.013G099700
[exp]
4.89 0.8097 SGR2.1
AT2G47830 Cation efflux family protein (... Potri.002G209023
[exp]
5.65 0.7597
AT1G01020 ARV1 Arv1-like protein (.1.2) Potri.002G181700
[exp]
6.00 0.7615
AT4G03090 sequence-specific DNA binding;... Potri.002G213400
[exp]
9.00 0.7943
AT2G16920 UBC23 ,PFU2 PHO2 FAMILY UBIQUITIN CONJUGAT... Potri.004G176000
[exp]
11.31 0.7339
AT2G21630 Sec23/Sec24 protein transport ... Potri.002G238500
[exp]
11.61 0.7642
Potri.014G044850
[exp]
14.35 0.6729
AT2G47020 Peptide chain release factor 1... Potri.014G114000
[exp]
17.88 0.7551
AT5G25270 Ubiquitin-like superfamily pro... Potri.018G115500
[exp]
18.97 0.7423

Potri.017G111800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.