Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18700 746 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) AT3G17830 49 / 7e-06 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G13830 46 / 2e-05 J20 DNAJ-like 20 (.1.2) AT1G24120 46 / 7e-05 ARL1 ARG1-like 1 (.1) AT3G62600 45 / 9e-05 ATERDJ3B DNAJ heat shock family protein (.1) AT5G05750 44 / 0.0002 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G56300 43 / 0.0002 Chaperone DnaJ-domain superfamily protein (.1) AT3G57340 42 / 0.0009 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102875 [exp] 47 / 1e-06 AT1G18700 50 / 9e-09 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) Potri.017G058400 [exp] 46 / 2e-05 AT4G13830 189 / 3e-61 DNAJ-like 20 (.1.2) Potri.001G319100 [exp] 46 / 2e-05 AT4G13830 157 / 8e-49 DNAJ-like 20 (.1.2) Potri.010G036200 [exp] 47 / 3e-05 AT1G24120 566 / 0.0 ARG1-like 1 (.1) Potri.002G020700 [exp] 44 / 7e-05 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 45 / 0.0001 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 45 / 0.0002 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.008G193500 [exp] 44 / 0.0003 AT1G24120 568 / 0.0 ARG1-like 1 (.1) Potri.006G153700 [exp] 43 / 0.0005 AT3G57340 391 / 8e-136 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001649 [exp] 880 / 0 AT1G18700 718 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) Lus10021658 [exp] 805 / 0 AT1G18700 657 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4) Lus10020949 [exp] 52 / 1e-06 AT1G28210 407 / 2e-141 DNAJ heat shock family protein (.1.2) Lus10003150 [exp] 50 / 1e-06 AT4G13830 151 / 3e-46 DNAJ-like 20 (.1.2) Lus10002356 [exp] 50 / 1e-06 AT4G13830 144 / 1e-43 DNAJ-like 20 (.1.2) Lus10002355 [exp] 50 / 1e-06 AT4G13830 139 / 2e-41 DNAJ-like 20 (.1.2) Lus10003149 [exp] 49 / 5e-06 AT4G13830 141 / 5e-42 DNAJ-like 20 (.1.2) Lus10030079 [exp] 47 / 3e-05 AT3G57340 420 / 6e-147 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1), Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.2) Lus10030660 [exp] 47 / 3e-05 AT1G24120 588 / 0.0 ARG1-like 1 (.1) Lus10030827 [exp] 47 / 4e-05 AT1G24120 545 / 0.0 ARG1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.017G112200.2 pacid=42814084 polypeptide=Potri.017G112200.2.p locus=Potri.017G112200 ID=Potri.017G112200.2.v4.1 annot-version=v4.1 ATGTCGTCAATGGCATCGAAGATCAAAGCCTACAGCGTCCCTCTCTTCCTATTTTCCCTTTCCGTCTTCTACCAGCTCGTCGTCCTTCCTCGATCCTTCC CTGCCTCTCATTACGACGTTTTGGGGATAAAGCGGTATAGTTCTGTTGAAGAAGTGAAAGAAGCATACGACAAGTTGTCTTCTAAATGGAATTCAGAAGC GGGAATTCCTGCCACTAGTGATTTTATAAAGATCCAATATGCTTATGAGCTGCTGACGAATCCTTTATGGAAAAGGGACTATGACATATTTGGCATTGAT GAGCAAGCTCATATTATGGACAAGATTAACTTGCAACATGCTGGGGAAAGCATTTCAGGCATAGATCTTCCATTACTAGAAGCTACTACTTTTGATCTTG GATTTCACACATTTAATGAGTTTACATCTCAAGAGTTTGCACCTATGTTTGATAGTTCTAAACCATGGCTGGTTCTGGTATATTCACTTGGGAGCAAGAA ATGTGCTCAATTCTTTTCTTCGTGGATCGATATCACTGGTCTGTTGGATGGTGTTGCCGGTGTTGGTATTTTGGAACTTGGTGAGCTTCAACTTGCAATA TCTCTTGCTGAGAGAAAGCCAACTGGAAAATTTTTCTTTCGGAATGGACTTCCTTCGCTTGTTGCTTTTCCATCTGGCTGCAAAGCATCAGCTTGTCTTG TTAGGTTTGAGGGTGATCTCTCCACTGATGCAGTCATTGATTGGTTTGCAACAAAAGTGCTGGGTTTACCTCGCATTTTATACTATTCAAAGGAATCACT GGGACAAAATTTTCTGGCAAAAAGTGGTCCCCACAAGGTTAAGGTCATTTTCTTCTCAAAAACAGGAGCGCGTGCTACTCCATTTGTACGCCAGACTGCT AAAAGTTATTGGGCTTATACCTCTTTTGCATTTGTGTTATGGCGGGAGGAGGATTTCTCTGTATGGTGGAATGCATTTGAGGTGGAATCTGCCCCTGCTA TTGTTTTTGTGAAAGACTCGGGGGTGAAACCTGTTGTTGTCCATGGAATGGTCAATAATTCAGAGTTTTTAGATCTTGTCGAAAAAAATAAACAACAAGA ACTTCCTCAACTAAGAAGTGCAACATCAATGGAACTTGGCTGTGATGCCCGAGGCCATTCTCGTGCTGGAAATGATACCATATCATGGTATTGTGTTATT CTAGCAGGAAGGCTGGGCCCAGAACTTAACAAGTTGCGTGAAATTATGCGCAGGATACAAGAACGATTATCAATAGATAGTGAATCGAGTGAAGCTGATA AAGAGCAACCATTAGCATTGACTGGTGCATTTAAAGGCAAACGATTGACTTTTACTTGGCTTGACGGGGAAGCCCAAGAAAAATATTGTTCCTACTACCT TCATTCAGAAACCAGCTATGATACGTGTGGACCAAGGAGGGATTTGATTGATGTACCTAAGTTATTTATTGTGCGCTATAAAAGGAATGCTTCTGAGGAT GATATCAAGGTTAATACAAAGCCAAAGAAAATATTTAATGTATTTGAAGATGAGGACGTGGATCCTGCATCACAACTTGTTGCCAGATACAATGGCTCAG ATGAAATTTCACAGATCATGCTATGGATGTCTGAAATAATCAGGGATGGTGACACCAGGAATCTGCCCTTCTATAGATCAAAAACTCCTGCTCTTGTTCC TGAGGATTCAGAGCCTATCTGGTCAAGAGGTGCCCAAAGCATCTTTTCCAAAAGCATAGGAATCAAGCAGAGGATCTACAACAATATTAGCAGAATTTAC GATTATCTAGGGGATCCAAGAATCGGCCCAATATTACTTTTGGGAGCCTTGATGTCGTTTGGTACCATATGGTTGATTAGGAGCCAATCCACTCATCCTA CTCAAGCAAGTCAGCTAAGCCAGTCAAATGCGAAGGATGAAACTAGAGCGAGGCGGAGAGAAAGAGCAAAACATGCAGCAAAGAAAGATCAACCTCCTTC CATAACTGATAGTGAACCAAAAGGTGCTTACCAGATGCCGCTGTCAGACTCTGAATCTGAGTAG
AA sequence Show only first row Show all	>Potri.017G112200.2 pacid=42814084 polypeptide=Potri.017G112200.2.p locus=Potri.017G112200 ID=Potri.017G112200.2.v4.1 annot-version=v4.1 MSSMASKIKAYSVPLFLFSLSVFYQLVVLPRSFPASHYDVLGIKRYSSVEEVKEAYDKLSSKWNSEAGIPATSDFIKIQYAYELLTNPLWKRDYDIFGID EQAHIMDKINLQHAGESISGIDLPLLEATTFDLGFHTFNEFTSQEFAPMFDSSKPWLVLVYSLGSKKCAQFFSSWIDITGLLDGVAGVGILELGELQLAI SLAERKPTGKFFFRNGLPSLVAFPSGCKASACLVRFEGDLSTDAVIDWFATKVLGLPRILYYSKESLGQNFLAKSGPHKVKVIFFSKTGARATPFVRQTA KSYWAYTSFAFVLWREEDFSVWWNAFEVESAPAIVFVKDSGVKPVVVHGMVNNSEFLDLVEKNKQQELPQLRSATSMELGCDARGHSRAGNDTISWYCVI LAGRLGPELNKLREIMRRIQERLSIDSESSEADKEQPLALTGAFKGKRLTFTWLDGEAQEKYCSYYLHSETSYDTCGPRRDLIDVPKLFIVRYKRNASED DIKVNTKPKKIFNVFEDEDVDPASQLVARYNGSDEISQIMLWMSEIIRDGDTRNLPFYRSKTPALVPEDSEPIWSRGAQSIFSKSIGIKQRIYNNISRIY DYLGDPRIGPILLLGALMSFGTIWLIRSQSTHPTQASQLSQSNAKDETRARRRERAKHAAKKDQPPSITDSEPKGAYQMPLSDSESE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18700			DNAJ heat shock N-terminal dom...		Potri.017G112200 [exp]	0	1
AT3G21690			MATE efflux family protein (.1...		Potri.011G002700 [exp]	4.58	0.8474
AT2G34970			Trimeric LpxA-like enzyme (.1)		Potri.005G045200 [exp]	7.34	0.8421
AT2G26770		SCAB1	stomatal closure-related actin...		Potri.009G066800 [exp]	9.21	0.7958
AT3G53380			Concanavalin A-like lectin pro...		Potri.016G087800 [exp]	20.49	0.8234
AT3G62360			Carbohydrate-binding-like fold...		Potri.002G194000 [exp]	22.27	0.8353
					Potri.004G062700 [exp]	25.45	0.7694
AT3G44330			unknown protein		Potri.009G160400 [exp]	26.60	0.8419
AT5G47540			Mo25 family protein (.1)		Potri.002G222800 [exp]	34.20	0.8398
AT2G43780			unknown protein		Potri.019G096500 [exp]	35.41	0.8295
AT1G34130		STT3B	staurosporin and temperature s...		Potri.015G028300 [exp]	39.59	0.8360

Compare expression of checked genes

Potri.017G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.