Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37630 188 / 2e-56 MYB AtPHAN, AtMYB91, MYB91, AS1 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) AT5G52600 97 / 1e-23 MYB AtMYB82 myb domain protein 82 (.1) AT3G01530 97 / 1e-23 MYB ATMYB57 myb domain protein 57 (.1) AT1G08810 98 / 4e-23 MYB ATMYB60 myb domain protein 60 (.1.2) AT3G46130 96 / 2e-22 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT1G25340 96 / 2e-22 MYB ATMYB116 myb domain protein 116 (.1.2) AT3G27810 94 / 2e-22 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G59780 94 / 5e-22 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT2G26950 95 / 1e-21 MYB ATMYB104 myb domain protein 104 (.1) AT1G68320 94 / 1e-21 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102600 [exp] 441 / 1e-155 AT2G37630 243 / 9e-78 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.006G085900 [exp] 199 / 1e-60 AT2G37630 414 / 2e-144 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Potri.012G055600 [exp] 100 / 5e-24 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.015G046200 [exp] 100 / 1e-23 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G122100 [exp] 99 / 2e-23 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.019G045900 [exp] 97 / 1e-22 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2) Potri.013G067500 [exp] 97 / 1e-22 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.004G115600 [exp] 94 / 1e-22 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.004G118000 [exp] 94 / 3e-22 AT3G30210 209 / 1e-67 myb domain protein 121 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025355 [exp] 195 / 3e-59 AT2G37630 422 / 2e-148 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10024392 [exp] 194 / 8e-59 AT2G37630 456 / 3e-161 ARABIDOPSIS PHANTASTICA-LIKE 1, MYB DOMAIN PROTEIN 91, ASYMMETRIC LEAVES 1, myb-like HTH transcriptional regulator family protein (.1) Lus10009037 [exp] 97 / 6e-23 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10009522 [exp] 97 / 1e-22 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10005886 [exp] 96 / 2e-22 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10020343 [exp] 96 / 3e-22 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10040063 [exp] 97 / 4e-22 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10041435 [exp] 96 / 6e-22 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10030677 [exp] 95 / 6e-22 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10034338 [exp] 95 / 1e-21 AT1G68320 262 / 2e-86 myb domain protein 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G112300.1 pacid=42814538 polypeptide=Potri.017G112300.1.p locus=Potri.017G112300 ID=Potri.017G112300.1.v4.1 annot-version=v4.1 ATGAAGGAGAGACAACGTTGGCAACCAGAAGAAGATGCTATCCTAAGAGCCTATGTTAAGCAATATGGTCCGAAAGAATGGAATCTCATCTCTCAACGTG TGGAAGCTAGTGGCAAAACCCTTAACAGAGACCCAAAATCCTGCCTTGAACGCTGGAAAAACTACCTCAAACCAGGCATCAAGAAGGGATGTCTGACCCC AGAAGAGCAAGCCCTTGTCATTTCTCTCCAGGCCAAGTACGGTAACAAGTGGAAAAAGATTGCTAGTGAAGTCCCTGGCCGTACAGCAAAGAGGCTTAGC AAGTGGTGGGAGGTTTTTAAAGAGAAGCAATCAAAGTCCAAGTCTTTATTGCACCATCACCATAATACACAATACTCCAATCAGCACCACCAACGAGAAG GGAATATTCCGGCCACCGGAGATAAAACTTCTTCTCAAGGAAAATACGACCACATCTTGGAGACCTTTGCTGAGAAGTACGTGCAACCGAAGATCCTCAA CCAGGTTCCATCTTTTCCCTGTAGTTTATCCGCTATGATGCCTCCCATGCCCGACCCTGACCCGGTTCTCTCCCTCGGGTCTGTTTGGATGAACCCCGGT TCAAACTTGTCATCTTCAACTAGCACCACAGTTTCAGCAACACCATCCCCATCAGTGAGCTTGTCATTATCTCCTTCTGATCCGGGGCTTGACCCGAGCT TGACCCGGATCATACCGGGTCAGCAAATGGGTACTTTGGTTCAGTATTGCAAGGAGCTCGAGGAGGGGAGGCAAAACTGGCTGCAGCATAAGAAGGAGGC AACATGGAGGCTTAGTAGACTAGAGCAGCAGTTAGAGTCAGAGAAAGCAAGGAAGAGAAGGGAGAAAATGGAGGAGATCGAGGCAAAGATAAGGTGTTTG AGAGAGGAAGAGGTGAGCTTTATGAGTAAGATCGAGAGCGAGTATAAAGAGCAGTTAAGTGCATTGCATAGAGACGCTGAAAGTAAAGAGGCAAAACTTG TGGAAGCTTGGAGCAGCAAGCATGCCAGGTTTGCCAAGCTTGTTGAGCAAATTGGGGTGCATTTTGGTGGCGGTGGCGGTCATGGGGTTTAA
AA sequence Show only first row Show all	>Potri.017G112300.1 pacid=42814538 polypeptide=Potri.017G112300.1.p locus=Potri.017G112300 ID=Potri.017G112300.1.v4.1 annot-version=v4.1 MKERQRWQPEEDAILRAYVKQYGPKEWNLISQRVEASGKTLNRDPKSCLERWKNYLKPGIKKGCLTPEEQALVISLQAKYGNKWKKIASEVPGRTAKRLS KWWEVFKEKQSKSKSLLHHHHNTQYSNQHHQREGNIPATGDKTSSQGKYDHILETFAEKYVQPKILNQVPSFPCSLSAMMPPMPDPDPVLSLGSVWMNPG SNLSSSTSTTVSATPSPSVSLSLSPSDPGLDPSLTRIIPGQQMGTLVQYCKELEEGRQNWLQHKKEATWRLSRLEQQLESEKARKRREKMEEIEAKIRCL REEEVSFMSKIESEYKEQLSALHRDAESKEAKLVEAWSSKHARFAKLVEQIGVHFGGGGGHGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.017G112300 [exp]	0	1
AT1G29730			Leucine-rich repeat transmembr...		Potri.016G012300 [exp]	2.00	0.9654
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Potri.001G254100 [exp]	2.00	0.9742
AT1G78170			unknown protein		Potri.005G165300 [exp]	3.74	0.9729
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	4.24	0.9676
AT4G22290			Ubiquitin-specific protease fa...		Potri.004G002000 [exp]	6.16	0.9321
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.002G045000 [exp]	6.70	0.9504	AUX22.5
AT4G38840			SAUR-like auxin-responsive pro...		Potri.004G165450 [exp]	6.92	0.9460
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	9.79	0.9594
AT5G47500		PME5	pectin methylesterase 5, Pecti...		Potri.003G076900 [exp]	12.96	0.9398
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	13.60	0.9638

Compare expression of checked genes

Potri.017G112300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.