Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G05160 852 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20510 439 / 4e-149 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20500 423 / 7e-143 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 417 / 3e-140 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 414 / 2e-139 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT3G21240 413 / 8e-139 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 406 / 5e-136 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT4G19010 406 / 6e-136 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 400 / 1e-133 AMP-dependent synthetase and ligase family protein (.1) AT1G51680 396 / 4e-132 AT4CL1, 4CL.1, 4CL1 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G102000 [exp] 1030 / 0 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G012800 [exp] 450 / 3e-153 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.010G230200 [exp] 448 / 2e-152 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 441 / 9e-150 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 436 / 7e-148 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.017G033600 [exp] 416 / 7e-140 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G049500 [exp] 410 / 1e-137 AT1G65060 781 / 0.0 4-coumarate:CoA ligase 3 (.1.2) Potri.006G169700 [exp] 407 / 1e-136 AT3G21240 802 / 0.0 4-coumarate:CoA ligase 2 (.1) Potri.003G099700 [exp] 404 / 2e-135 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021431 [exp] 861 / 0 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 860 / 0 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 665 / 0 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 646 / 0 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10015998 [exp] 434 / 6e-147 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 439 / 5e-146 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10037934 [exp] 418 / 2e-140 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10026143 [exp] 405 / 6e-136 AT1G51680 838 / 0.0 ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1, 4-coumarate:CoA ligase 1 (.1.2.3) Lus10038667 [exp] 405 / 4e-135 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 392 / 1e-130 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.017G112800.1 pacid=42813757 polypeptide=Potri.017G112800.1.p locus=Potri.017G112800 ID=Potri.017G112800.1.v4.1 annot-version=v4.1 ATGGAGAAATCTGGTTATGGCCGTGATGGTATATACAGGTCATTAAGACCAACACTTGTCCTTCCTAGGGATTCTAATCTTTCTTTGGTCTCATTTCTTT TCAGAAACTCCAATTCTTATCCTCATAAACCAGCTCTTATTGATGCAGATTTGTCAATAACCTTATCTTTTTCAGAGCTCAAATCCATTGTTATCAAGTT CGCTCATGGATTACTCAATCTGGGCATCTCTAAAAATGATGTTATTCTTATCTTTGCTCCCAATTCATACCAATTCCCTACCTGTTTCTTGGCCATCACT TCCATTGGTGCTGTTGCAACAACTGCGAATCCTCTTTATACAACCTCAGAGCTTTCAAAACAGATTAAAGATTCTAATCCCAAGTTGGTTATCACAGTCC CTGAGTTATGGGACAAAGTCAAAGGCTTCAATTTGCCTGCTGTCTTTCTAGGACCAAAAGAGGTGTCTTTGCCATTGGAGTCAGGTTCAAGAATCAGAAG TTTCCATTCTTTGGTTGAGTTAGGAGGGTCTAACTCTGAGTTTCCTGTGAGTGATGTGAAGCAAAGTGATATAGCTACGCTTTTGTATTCGTCAGGTACT ACAGGGGTTAGTAAAGGAGTGATCTTGACTCATGGGAATTTCATTGCTGCATCTTTAATGGTCAGTATGGATCAAGTAATGGCAGGTGAGATACACAATG TGTTCCTTTGTTTCTTGCCCATGTTTCATGTGTTTGGCTTGGCTGTGATTACTTACTCACAGCTACAAATGGGAAATGCTGTAGTGTCAATGGGGAAGTT TGAATTTGAGATGGTTTTGAGGACTATTGAGAAGTATAGAGTGACCCATATGTGGGTTGTGCCCCCAGTAATACTTGCTTTGTCTAAACAGAATTTGGTT AAGAAGTATGACCTTTCGTCATTGAGAAATATTGGTTCAGGCGCTGCTCCTCTGGGAAAAGATTTGATGAAGGAATGCGCCAAGAATTTGCCGGATGCTA CAATAATTCAGGGCTTTGGCATGACTGAAACTTGTGGCATTGTTTCATTGGAGGATCCGAGAATAGGTGTTCGACATTCTGGTTCTGCTGGAATACTAAA TGCAGGAATTGAGGCCCAGATAATCAGTGTGGAAACTGCAAAGCCTCTCCCTCCTAATCAGTTAGGGGAAATATGGGTTAGGGGACCCAATATGATGAGA GGTTATTTCAATAATCCGCAAGCCACAAAAGATACCATAGATAAAAAGGGTTGGGTACATACTGGAGATCTTGGATATTTTGATGATGATGGACAACTTT TTGTTGTTGATCGGATTAAAGAGCTCATCAAGTACAAAGGTTTTCAGGTGGCACCCGCTGAGCTAGAAGGGCTGCTAGTTTCTCATCCTGAAATTTTGGA TGCTGTTGTCACCCCATATCCTGACGCTGAAGCTGGTGAGGTCCCAGTTGCATATGTTGTGCGCTCACCCAACAGCGCACTGACAGAAGAAGATGTTCAG AAATTTATTTCTGATCAGGTTGCACCTTTCAAAAGATTGCGGAAGGTGACTTTCATCAATAGTGTACCTAAATCAGCTTCAGGAAAAATCCTCAGAAGAG AGCTCGTTCAGAAAGTGAAATCCAAGATGTGA
AA sequence Show only first row Show all	>Potri.017G112800.1 pacid=42813757 polypeptide=Potri.017G112800.1.p locus=Potri.017G112800 ID=Potri.017G112800.1.v4.1 annot-version=v4.1 MEKSGYGRDGIYRSLRPTLVLPRDSNLSLVSFLFRNSNSYPHKPALIDADLSITLSFSELKSIVIKFAHGLLNLGISKNDVILIFAPNSYQFPTCFLAIT SIGAVATTANPLYTTSELSKQIKDSNPKLVITVPELWDKVKGFNLPAVFLGPKEVSLPLESGSRIRSFHSLVELGGSNSEFPVSDVKQSDIATLLYSSGT TGVSKGVILTHGNFIAASLMVSMDQVMAGEIHNVFLCFLPMFHVFGLAVITYSQLQMGNAVVSMGKFEFEMVLRTIEKYRVTHMWVVPPVILALSKQNLV KKYDLSSLRNIGSGAAPLGKDLMKECAKNLPDATIIQGFGMTETCGIVSLEDPRIGVRHSGSAGILNAGIEAQIISVETAKPLPPNQLGEIWVRGPNMMR GYFNNPQATKDTIDKKGWVHTGDLGYFDDDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVTPYPDAEAGEVPVAYVVRSPNSALTEEDVQ KFISDQVAPFKRLRKVTFINSVPKSASGKILRRELVQKVKSKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G05160			AMP-dependent synthetase and l...		Potri.017G112800 [exp]	0	1
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Potri.012G061600 [exp]	1.00	0.9276
AT5G12240			unknown protein		Potri.009G069000 [exp]	2.44	0.8995
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Potri.008G066800 [exp]	3.00	0.8894
					Potri.018G111650 [exp]	3.74	0.8726
AT1G30910			Molybdenum cofactor sulfurase ...		Potri.003G154900 [exp]	4.47	0.8859
AT5G22540			Plant protein of unknown funct...		Potri.004G187100 [exp]	5.00	0.8804
					Potri.003G152200 [exp]	7.07	0.8266
AT1G14685	BBR_BPC	BBR/BPC2, ATBPC...	basic pentacysteine 2 (.1.2.3)		Potri.015G032900 [exp]	9.38	0.8640	Pt-GBP.7
AT5G10030	bZIP	OBF4, TGA4	OCS ELEMENT BINDING FACTOR 4, ...		Potri.007G079900 [exp]	10.09	0.8781	STGA1.2
AT1G49760		PABP8, PAB8	poly(A) binding protein 8 (.1)...		Potri.002G124200 [exp]	10.39	0.8384

Compare expression of checked genes

Potri.017G112800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.