Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38510 365 / 1e-122 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G25290 83 / 3e-17 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT1G63120 69 / 1e-12 ATRBL2 RHOMBOID-like 2 (.1) AT1G12750 67 / 5e-12 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT3G53780 63 / 2e-10 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT2G29050 62 / 3e-10 ATRBL1 RHOMBOID-like 1 (.1.2) AT1G52580 60 / 1e-09 ATRBL5 RHOMBOID-like protein 5 (.1) AT5G07250 60 / 1e-09 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G77860 58 / 5e-09 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT4G23070 45 / 5e-05 ATRBL7 RHOMBOID-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G086300 [exp] 70 / 1e-12 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.003G019500 [exp] 69 / 1e-12 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.001G241300 [exp] 67 / 9e-12 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.012G019350 [exp] 61 / 1e-11 ND / Potri.003G122900 [exp] 64 / 7e-11 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.009G031900 [exp] 62 / 4e-10 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.015G142000 [exp] 61 / 6e-10 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.012G139600 [exp] 59 / 4e-09 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.001G108700 [exp] 56 / 2e-08 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023145 [exp] 422 / 3e-145 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10000628 [exp] 419 / 4e-144 AT5G38510 335 / 3e-112 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10022969 [exp] 96 / 2e-21 AT1G25290 309 / 3e-104 RHOMBOID-like protein 10 (.1.2) Lus10001612 [exp] 75 / 1e-14 AT1G25290 242 / 2e-78 RHOMBOID-like protein 10 (.1.2) Lus10024497 [exp] 65 / 4e-11 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10023789 [exp] 65 / 5e-11 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2) Lus10003971 [exp] 65 / 7e-11 AT5G02270 530 / 0.0 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, ATP-binding cassette I20, non-intrinsic ABC protein 9 (.1.2) Lus10017840 [exp] 63 / 1e-10 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10027436 [exp] 62 / 4e-10 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10005464 [exp] 60 / 2e-09 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.017G112900.1 pacid=42814363 polypeptide=Potri.017G112900.1.p locus=Potri.017G112900 ID=Potri.017G112900.1.v4.1 annot-version=v4.1 ATGGTTTACATGGCTGTAGTTCCAATATGCTACAAAATCCCCTGTAAAGATCATACTCTCTCAATTCGAAATTTAGCAAGGCAACACGAGAGAGGTCTTC TTTGTGCCTGTTCTGCTTTTGCACAGGGGGGCAGTTACCTCTCAATTTCAAGTGATGTGCAGAGGAATTGGCCAGTAATATATACAACTGCTGATGTTCT GGTGAAAGTTAAGACTAGAGGTAGGACGAATGCTTCAAAAGGAACGATTCTTAACCAGGGTCTCTTGAAATTTCAGAGCGTGATGGACGTACCCCACCTG CATAAAATCCACAGAACAAGTAGAGAAAATCTCTCTGTGGCGTGCTGTGCATCAAAGTCTGGTACAAATGAGAAGCAACTGAGATTATTAGATTCTTACT TTGGAAAACTCCAAGATAATGTAAGTGAGCCCTCTTCAGATTCTTGTAACGAGAGGACAGATTTTTTGGATACAAGAGTGCAAATCAATGTGAAGGAGGA GCTGGAATATCTAAATGCTTATCTTGACAAGGTTGATAAAGATGCAAACTTAGAGAATAATGTATCATCAACTTTCAATGATGAAGCTACGGAGGAAAAT CCAATAGTAAAACCAATATCAGTCAGTAAAGAATCTAGAAGAGATAATGAAGAGAGACTGAGAAGTTTCAGGAATCTGAGAAATCAGTATGTTGAAAGTG GTTCGAGGAGGTCTGAAGCTTTAGAGCAAAATTATGAAACCTCTTATTTCTACTTAATAGGTACACTGGCTTCCATAAATATTGCCGTTTTTCTGTTCGA AATTGCTAGTCCGGTGAGGAATTCCGAATTTGCGCTCTTTTCACTCCCTCTGTTATATGGCGCAAAGATAAATGAATTGATCCTAGTTGGAGAGTGGTGG AGGCTTGTGACACCAATGTTTCTGCACTCTGGAGCTTTTCATGTGGTTCTTGGATCTTGGTCACTGCTTACCTTTGGGCCTGAAGTTTGTCGAGGTTATG GTTCCTTTACATTTTTCTTGATATACGTGCTTGGAGGAATTTCAGGAAACTTGACAAGCTTTCTCCACACACCAGAGCCAACTGTTGGTGGCACAGGACC AGTATTTGCCATTATTGGAGCTTGGCTCATTTATCAGAATCAAAATAAGGATGTAATATCGAAGGATGATTTTGATCGTATGTTCCAGAAGGCAGTAATC ACTACTGCTGTTAGCTTCATCTTGAGCCATTTTGGTCCAATCGATGACTGGACACATTTGGGAGCAGTTTTGACAGGCATAGTTTATGGTTTTTTCACGT GTGCAACTCTACAATTGGATGATGCGTCTTCAAGAAGTGGTCAAGATGAAGGCATTGCGCTTGTTAAAAGACATGCAGATCCTTGTAAATCACTCATTAT ATTCACCATCTTCATTCTCTTCTTAAGCTCTATGCTTTTCTTTGTTGAACCTCCCCTAGAAACAGTAGTCCTTGAAGACTCCGTATAG
AA sequence Show only first row Show all	>Potri.017G112900.1 pacid=42814363 polypeptide=Potri.017G112900.1.p locus=Potri.017G112900 ID=Potri.017G112900.1.v4.1 annot-version=v4.1 MVYMAVVPICYKIPCKDHTLSIRNLARQHERGLLCACSAFAQGGSYLSISSDVQRNWPVIYTTADVLVKVKTRGRTNASKGTILNQGLLKFQSVMDVPHL HKIHRTSRENLSVACCASKSGTNEKQLRLLDSYFGKLQDNVSEPSSDSCNERTDFLDTRVQINVKEELEYLNAYLDKVDKDANLENNVSSTFNDEATEEN PIVKPISVSKESRRDNEERLRSFRNLRNQYVESGSRRSEALEQNYETSYFYLIGTLASINIAVFLFEIASPVRNSEFALFSLPLLYGAKINELILVGEWW RLVTPMFLHSGAFHVVLGSWSLLTFGPEVCRGYGSFTFFLIYVLGGISGNLTSFLHTPEPTVGGTGPVFAIIGAWLIYQNQNKDVISKDDFDRMFQKAVI TTAVSFILSHFGPIDDWTHLGAVLTGIVYGFFTCATLQLDDASSRSGQDEGIALVKRHADPCKSLIIFTIFILFLSSMLFFVEPPLETVVLEDSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38510			Rhomboid-related intramembrane...		Potri.017G112900 [exp]	0	1
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Potri.017G030100 [exp]	1.41	0.9580
AT4G17300		ATNS1, NS1, OVA...	ovule abortion 8, Class II ami...		Potri.017G028800 [exp]	2.82	0.9489	NS1.2
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.017G041600 [exp]	3.00	0.9439
AT1G06690			NAD(P)-linked oxidoreductase s...		Potri.005G207100 [exp]	3.16	0.9548
AT5G13770			Pentatricopeptide repeat (PPR-...		Potri.010G098700 [exp]	3.46	0.9547
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Potri.014G155800 [exp]	5.91	0.9481	HPL1.1
AT3G56040		UGP3	UDP-glucose pyrophosphorylase ...		Potri.010G185800 [exp]	9.16	0.9378
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	10.24	0.9258
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015400 [exp]	10.95	0.9473
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.005G069100 [exp]	12.64	0.9260

Compare expression of checked genes

Potri.017G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.