Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04560 156 / 8e-49 AWPM-19-like family protein (.1) AT5G46530 88 / 2e-22 AWPM-19-like family protein (.1) AT1G29520 88 / 3e-22 AWPM-19-like family protein (.1) AT5G18970 62 / 4e-12 AWPM-19-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G064200 [exp] 158 / 1e-49 AT1G04560 214 / 2e-71 AWPM-19-like family protein (.1) Potri.001G354500 [exp] 83 / 2e-20 AT1G29520 194 / 3e-64 AWPM-19-like family protein (.1) Potri.011G077800 [exp] 79 / 5e-19 AT5G46530 164 / 2e-52 AWPM-19-like family protein (.1) Potri.008G200000 [exp] 45 / 3e-06 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014456 [exp] 160 / 2e-50 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10023713 [exp] 159 / 4e-50 AT1G04560 254 / 2e-87 AWPM-19-like family protein (.1) Lus10017578 [exp] 158 / 1e-49 AT1G04560 148 / 1e-45 AWPM-19-like family protein (.1) Lus10004587 [exp] 96 / 4e-25 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10011973 [exp] 95 / 5e-25 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10015255 [exp] 94 / 1e-24 AT5G46530 240 / 2e-82 AWPM-19-like family protein (.1) Lus10025374 [exp] 93 / 4e-24 AT5G46530 241 / 4e-83 AWPM-19-like family protein (.1) Lus10033541 [exp] 91 / 3e-23 AT1G04560 91 / 2e-23 AWPM-19-like family protein (.1) Lus10001116 [exp] 44 / 1e-05 AT5G18970 216 / 1e-72 AWPM-19-like family protein (.1) Lus10041238 [exp] 39 / 0.0004 AT5G18970 225 / 2e-76 AWPM-19-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05512 [poplar] [flax] AWPM-19 AWPM-19-like family
Representative CDS sequence Show only first row Show all	>Potri.017G113000.1 pacid=42813934 polypeptide=Potri.017G113000.1.p locus=Potri.017G113000 ID=Potri.017G113000.1.v4.1 annot-version=v4.1 ATGATGGCTGTTGGAAGGGATAGTAAAGATTTAATAGGTCCACTTTTAGCAGTGAACTTGGTATTTTATCTCATTGTGCTTGGGCTAGCAGGTTGGTCAG TTGACAAATACATCAATGGTGAACAGAATCACCCACATTTGGGTGGCAATCCAGCAACAAGCTTCATGTTGATATATGCACTGCTAAGTGGGGTAATTGG TGCTAGTTCAATGCTTGTTGGGTTTGTCCATCTTCGTGCATGGAGAAATGATAGTTTAGCAAGTGCAAGTGCCATGGCAATCATTTCTTGGGCTATTACT GCCCTTGCTTTTGGATTTGAATGCAAGCAAATCTTATTAGGAGGACACAGAGGAAAAAGATTGAAAACTTTGGAAGCACTGATTATAATATCACTCCTAA GTCAGTTCCTGTATGTGGTGCTTCTCCACGCTGGGTTTTTCAGGAGCAGATACGGACCTGGTTATCATAATTATGGCAGTGATTCTGTCGGCGACATCCC CGTGGGCAATGAGCCACATATGTCTAGCACCTGA
AA sequence Show only first row Show all	>Potri.017G113000.1 pacid=42813934 polypeptide=Potri.017G113000.1.p locus=Potri.017G113000 ID=Potri.017G113000.1.v4.1 annot-version=v4.1 MMAVGRDSKDLIGPLLAVNLVFYLIVLGLAGWSVDKYINGEQNHPHLGGNPATSFMLIYALLSGVIGASSMLVGFVHLRAWRNDSLASASAMAIISWAIT ALAFGFECKQILLGGHRGKRLKTLEALIIISLLSQFLYVVLLHAGFFRSRYGPGYHNYGSDSVGDIPVGNEPHMSST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04560			AWPM-19-like family protein (....		Potri.017G113000 [exp]	0	1
AT5G41110			unknown protein		Potri.012G104200 [exp]	1.00	0.9488
					Potri.008G176201 [exp]	7.61	0.8877
AT5G17530			phosphoglucosamine mutase fami...		Potri.010G223000 [exp]	8.18	0.8580
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Potri.008G168800 [exp]	8.60	0.8527
AT1G22930			T-complex protein 11 (.1.2)		Potri.013G105300 [exp]	12.96	0.8904
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	14.89	0.9156
AT4G27220			NB-ARC domain-containing disea...		Potri.011G124100 [exp]	15.87	0.8634
AT5G48570		ROF2, ATFKBP65	FKBP-type peptidyl-prolyl cis-...		Potri.014G149400 [exp]	17.20	0.9119
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Potri.011G150100 [exp]	18.41	0.8270
AT1G77840			Translation initiation factor ...		Potri.004G093600 [exp]	20.39	0.8710

Compare expression of checked genes

Potri.017G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.