Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02530 972 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 958 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT1G24510 213 / 2e-62 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G26360 182 / 8e-51 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 180 / 8e-50 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT5G20890 178 / 3e-49 TCP-1/cpn60 chaperonin family protein (.1) AT3G18190 169 / 7e-46 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 160 / 2e-42 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G03960 131 / 1e-32 TCP-1/cpn60 chaperonin family protein (.1) AT1G55490 57 / 3e-08 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101500 [exp] 1020 / 0 AT3G02530 968 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.010G051700 [exp] 199 / 7e-57 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 196 / 5e-56 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.006G128600 [exp] 192 / 1e-54 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 188 / 5e-53 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 181 / 2e-50 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1) Potri.T046300 [exp] 181 / 5e-50 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 180 / 6e-50 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 180 / 7e-50 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017585 [exp] 1009 / 0 AT3G02530 1007 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10033546 [exp] 1008 / 0 AT3G02530 1008 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10006457 [exp] 204 / 1e-58 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 203 / 2e-58 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 199 / 5e-57 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10014511 [exp] 189 / 1e-53 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 189 / 2e-53 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 189 / 2e-53 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10037214 [exp] 182 / 8e-51 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1) Lus10021150 [exp] 182 / 2e-50 AT5G26360 1046 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [poplar] [flax] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Potri.017G113601.1 pacid=42813125 polypeptide=Potri.017G113601.1.p locus=Potri.017G113601 ID=Potri.017G113601.1.v4.1 annot-version=v4.1 ATGTCGATAAGATTATTAAACCCTAACGCGGAGGTTCTCAACAAATCGGCGGCGCTTCACATGAACATCAATGCCGCTAAAGGTTTACAAGATGTTCTAA AATCCAATCTCGGCCCCAAAGGCACCATCAAGATGCTTGTTGGTGGTGCTGGAGATATAAAGCTGACTAAGGATGGAAACACTCTTTTGAAAGAAATGCA AATTCAAAATCCGACGGCCATTATGATTGCAAGGACGGCTGTTGCCCAAGATGATATCAGTGGAGATGGTACGACGTCTACTGTGATTTTTATTGGAGAG CTTATGAAGCAATCTGAACGGTGCATCGATGAAGGGATGCATCCACGTGTATTGGTTGATGGTTTTGAGATTGCCAAAAGAGCCACTCTCCAGTTTCTTG AAAAATTTAAGACTCCCGTGGTCATGGGTGATGAACCTGACAGGGAAATTCTTAAAATGGTTGCTAGGACAGCCCTAAGGACAAAGCTGCATGAAGCTTT GGCAGATCAGTTAACTGACATAGTTGTCAATTCGGTGCTTTGTATTCGAAAGCCTGAGGAAGGCATTGATCTATTTATGGTGGAGATTATGCACATGCGT CATAAATTCGATGTTGACACGCGGCTTGTTGAAGGTCTTGTTCTTGACCATGGTTCTAGGCATCCTGATATGAAACGGCGGGCAGAGAACTGTTTTATCT TGACATGCAATGTGTCTTTGGAATATGAGAAAAGTGAAATAAATGCAGGATTTTTCTACTCAAATGCGGAGCAGAGGGAGGCAATGGTTACTGCTGAAAG GCGTCAGGTCGATGAAAGAGTTAAAAAAATTATTGAACTAAAAGATAAGGTTTGTTCTGGTACAGACAACAATTTTGTGGTTATCAATCAAAAGGGAATT GATCCTCCATCATTGGACCTTCTTGCACGAGCAGGGATAATTGCCCTGCGAAGAGCGAAGAGGAGAAATATGGAACGCCTGGTTTTGGCTTGTGGAGGAG AGGGTGTGAATTCTGTCGATAGTTTAACTCCTGACTGCCTTGGTTGGGCTGGACTGGTGTATGAGCACGTCCTTGGTGAAGAGAAGTATACATTTGTTGA AAATGTAAAGAACCCCCATTCTTGCACTATCTTAATAAAAGGACCCAATGACCATACAATTGCCCAAATAAAGGATGCTGTCCGTGATGGCTTGAGAGCT GTAAAAAACACCATTGAAGATGAAGCTGTTGTGCTTGGAGCAGGAGCTTTTGAATTTGCAGCCAGGAAATACCTAATCAATGAAGTCAAGAAAACAGTTA AAGGGCGTGCTCAGCTAGGTGTTGAAGCTTTTGCCGATGCCCTTCTCGTGGTGCCCAAAACACTGGCTGAGAATTCCGGGCTAGACACTCAAGATGAGAT TGTCACTCTCACGGGAGAGCATGACAGGGATAACATTGTTGGAATAAATCTCCAAACAGGAGGGCCCCTTGATCCTCAAATGGAGGGTATCTTCGACAAC TACTCTGTCAAGCGCCAACTCATAAACTCAGGGCCTGTTATCGCATCCCAATTGCTGCTGGTGGATGAAGTGATTAGGGCTGGGCGGAACATGAGGAAGC CAACTTAG
AA sequence Show only first row Show all	>Potri.017G113601.1 pacid=42813125 polypeptide=Potri.017G113601.1.p locus=Potri.017G113601 ID=Potri.017G113601.1.v4.1 annot-version=v4.1 MSIRLLNPNAEVLNKSAALHMNINAAKGLQDVLKSNLGPKGTIKMLVGGAGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGE LMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLEKFKTPVVMGDEPDREILKMVARTALRTKLHEALADQLTDIVVNSVLCIRKPEEGIDLFMVEIMHMR HKFDVDTRLVEGLVLDHGSRHPDMKRRAENCFILTCNVSLEYEKSEINAGFFYSNAEQREAMVTAERRQVDERVKKIIELKDKVCSGTDNNFVVINQKGI DPPSLDLLARAGIIALRRAKRRNMERLVLACGGEGVNSVDSLTPDCLGWAGLVYEHVLGEEKYTFVENVKNPHSCTILIKGPNDHTIAQIKDAVRDGLRA VKNTIEDEAVVLGAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVTLTGEHDRDNIVGINLQTGGPLDPQMEGIFDN YSVKRQLINSGPVIASQLLLVDEVIRAGRNMRKPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02530			TCP-1/cpn60 chaperonin family ...		Potri.017G113601 [exp]	0	1
AT5G57300			S-adenosyl-L-methionine-depend...		Potri.018G088400 [exp]	2.44	0.9288
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.009G157400 [exp]	3.74	0.9186
AT1G24510			TCP-1/cpn60 chaperonin family ...		Potri.008G182300 [exp]	4.00	0.9180
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.010G156700 [exp]	8.24	0.8763	RGP3.2
AT1G09270		IMPA-4	importin alpha isoform 4 (.1.2...		Potri.013G007300 [exp]	10.24	0.9032
AT1G49660		ATCXE5	carboxyesterase 5 (.1)		Potri.004G143100 [exp]	12.24	0.8930
AT1G49410		TOM6	translocase of the outer mitoc...		Potri.004G149200 [exp]	14.28	0.9126	TOM6.1
AT5G20890			TCP-1/cpn60 chaperonin family ...		Potri.001G341100 [exp]	14.42	0.8810
AT5G45775			Ribosomal L5P family protein (...		Potri.011G068900 [exp]	15.29	0.9206	Pt-L16.1
AT2G34480			Ribosomal protein L18ae/LX fam...		Potri.002G057600 [exp]	16.37	0.9267	RPL18.7

Compare expression of checked genes

Potri.017G113601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.