Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 358 / 3e-123 ATCXE17 carboxyesterase 17 (.1) AT1G68620 320 / 3e-108 alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 172 / 1e-50 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT5G62180 166 / 1e-48 ATCXE20 carboxyesterase 20 (.1) AT3G05120 166 / 3e-48 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 164 / 1e-47 alpha/beta-Hydrolases superfamily protein (.1) AT3G63010 164 / 1e-47 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 160 / 2e-46 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G23530 160 / 2e-46 ATCXE18 carboxyesterase 18 (.1) AT1G47480 159 / 4e-46 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G101400 [exp] 597 / 0 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 436 / 1e-153 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.008G118400 [exp] 418 / 7e-147 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G032400 [exp] 209 / 7e-65 AT1G68620 185 / 9e-56 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 203 / 9e-63 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1) Potri.003G192600 [exp] 199 / 5e-61 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G155800 [exp] 196 / 3e-60 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G028300 [exp] 193 / 3e-59 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G198800 [exp] 192 / 2e-58 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017587 [exp] 395 / 5e-138 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10033548 [exp] 395 / 6e-138 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10041473 [exp] 274 / 5e-90 AT1G68620 248 / 5e-80 alpha/beta-Hydrolases superfamily protein (.1) Lus10002019 [exp] 221 / 5e-70 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 218 / 2e-68 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10036168 [exp] 204 / 4e-63 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 201 / 7e-62 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10015989 [exp] 189 / 2e-57 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008439 [exp] 188 / 6e-57 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 182 / 6e-55 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12740 [poplar] [flax] Chlorophyllase2 Chlorophyllase enzyme
Representative CDS sequence Show only first row Show all	>Potri.017G113700.1 pacid=42814326 polypeptide=Potri.017G113700.1.p locus=Potri.017G113700 ID=Potri.017G113700.1.v4.1 annot-version=v4.1 ATGATAAGAAAAAATATGGCTGCCATTTCGTTTGATCCAAGAGTTAATCTTCAAATGAGCAAGAACTCTCACGGCGTAATCAGTGAAGAAATTGAAGGAC TCATCAGAGTTTACAAAGATGGACGCATCGAAAGGCCTCCTATAGTTCCTAATGTTCCTTGCAATGTGGCGCCAGTAGATGATGTGACAGCAAAAGATGT TGTTATCGATAAGTTCACTAACTTGTGGGCACGCATTTACGTCACAAAACGCTCAGGCATACTGCCTTTGCTTGTTTACTTCCATGGAGGTGGATTTTGT GTTGCTTCAGCTGCTTGGATTTGTTACCATGAGTTCTTGGCCAATCTTGCTTCTAAAGCAGGTTGCATCATCGTATCCGTAAACTACCGTCTAGCCCCAG AAAACCGTCTCCCTACTGCTTACGAAGACGGCATCAAGACCCTTATGTGGGTAAAACAACAGACTCTAAATTGTTCTCCTGAGCATAACTGGTGGTTAAG TCGGTGCAATTTCTCTAGCTTGTTCTTAGCTGGTGACAGTGCTGGAGCAAACATAGCATACAATATGGCTACAAGGCTAGGGTCCAGTAACAATCCTGAT TGCATGACAATTAAGCCTTTGTGTCTCAAGGGCATCATCTTGATCCAACCTTTCTTTGGAGGAGAGGCACGAACTTTGTCCGAGAAAAACATGACTCAAC CAGCTAACTCAGCACTGACTCTATCGGCTTCTGACACGTATTGGCTGTTATCACTGCCTTTAGGGTCTACCCGTGATCATCCATACTGCAACCCTTTAGC AAACGGTGCAAGCAAGTTGCGGGATCAAAGATTTCCAGCAACAATGGTATGCATATCTGAGATGGATATACTTAAGGATAGAAACTTGGAGTTTTGTGCT GCTTTGGTTAATGCTGGTAAGAGGGTAGAAAAAATGATTTACAAAGGAGTTGGCCATGCATTTCAAGTTCTACTTAATTCTCATCTCTCCCAAATCCGCG TTCAAGAGATGGTGTCCCATCTCAAGGCTTTCATCCACCAATGA
AA sequence Show only first row Show all	>Potri.017G113700.1 pacid=42814326 polypeptide=Potri.017G113700.1.p locus=Potri.017G113700 ID=Potri.017G113700.1.v4.1 annot-version=v4.1 MIRKNMAAISFDPRVNLQMSKNSHGVISEEIEGLIRVYKDGRIERPPIVPNVPCNVAPVDDVTAKDVVIDKFTNLWARIYVTKRSGILPLLVYFHGGGFC VASAAWICYHEFLANLASKAGCIIVSVNYRLAPENRLPTAYEDGIKTLMWVKQQTLNCSPEHNWWLSRCNFSSLFLAGDSAGANIAYNMATRLGSSNNPD CMTIKPLCLKGIILIQPFFGGEARTLSEKNMTQPANSALTLSASDTYWLLSLPLGSTRDHPYCNPLANGASKLRDQRFPATMVCISEMDILKDRNLEFCA ALVNAGKRVEKMIYKGVGHAFQVLLNSHLSQIRVQEMVSHLKAFIHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.017G113700 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	4.89	0.8566
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	9.05	0.8508
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	17.60	0.7971
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	19.44	0.8064
AT1G07160			Protein phosphatase 2C family ...		Potri.013G099400 [exp]	24.81	0.7908
					Potri.013G032900 [exp]	27.45	0.7953
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	44.36	0.7726
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	44.95	0.7483
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014636 [exp]	45.69	0.7683
					Potri.018G014550 [exp]	49.41	0.7283

Compare expression of checked genes

Potri.017G113700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.