Plant FIBer expression Database

Potri.017G113750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G113750.2 pacid=42812833 polypeptide=Potri.017G113750.2.p locus=Potri.017G113750 ID=Potri.017G113750.2.v4.1 annot-version=v4.1
ATGCAAACAACGAGATGGGCTGACAGTTTCTTAATTCCAATATCACTCAAAGAAGTAGATATCGTAAGCAAAGACTACTCTCCAGCATATATAGTAAGCT
TACAGGACACGACAGAGGAAGTAGAGGATTCTTCAATGGATTCTGCAACTCGCATTGGAAATAGCAGATGCCAACAAGAACAGCCTGTGACCATTGTAGG
TGCACCAACAACGGACGATGAGGTCTGTAATACGATTGCAGCTGGAAGTATTTTGGACATTGGTGGGGGCATTACACTGGAACATTTCACGAAGGAGAAT
AAAAATCAAATGGCAAGGGAGGCTTCAGATTGGCATGCTATGCAGTAG
AA sequence
>Potri.017G113750.2 pacid=42812833 polypeptide=Potri.017G113750.2.p locus=Potri.017G113750 ID=Potri.017G113750.2.v4.1 annot-version=v4.1
MQTTRWADSFLIPISLKEVDIVSKDYSPAYIVSLQDTTEEVEDSSMDSATRIGNSRCQQEQPVTIVGAPTTDDEVCNTIAAGSILDIGGGITLEHFTKEN
KNQMAREASDWHAMQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G113750
[exp]
0 1
AT2G30050 transducin family protein / WD... Potri.008G141300
[exp]
5.74 0.9355
AT5G05800 unknown protein Potri.008G196901
[exp]
6.00 0.9307
AT1G71160 KCS7 3-ketoacyl-CoA synthase 7 (.1) Potri.001G211400
[exp]
7.41 0.8957
AT2G32730 26S proteasome regulatory comp... Potri.004G183675
[exp]
7.74 0.9074
AT4G24130 Protein of unknown function, D... Potri.001G084200
[exp]
8.00 0.9229
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.009G067100
[exp]
10.00 0.9324
AT1G09020 ATSNF4, SNF4 homolog of yeast sucrose nonfe... Potri.005G029900
[exp]
18.02 0.8901
AT2G21520 Sec14p-like phosphatidylinosit... Potri.004G157700
[exp]
18.43 0.9254
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Potri.013G018800
[exp]
20.09 0.9263
AT1G05620 NSH2, URH2 nucleoside hydrolase 2, uridin... Potri.007G144600
[exp]
20.19 0.8575

Potri.017G113750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.