Plant FIBer expression Database

Potri.017G114100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38460 597 / 0 ALG6, ALG8 glycosyltransferase family (.1.2)
AT2G44660 99 / 6e-22 ALG6, ALG8 glycosyltransferase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G100500
[exp]
848 / 0 AT5G38460 568 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Potri.014G053200
[exp]
92 / 2e-19 AT2G44660 669 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017594
[exp]
638 / 0 AT5G38460 682 / 0.0 ALG6, ALG8 glycosyltransferase family (.1.2)
Lus10043344
[exp]
99 / 9e-22 AT2G44660 725 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
Lus10033554
[exp]
89 / 1e-20 AT5G38460 127 / 2e-35 ALG6, ALG8 glycosyltransferase family (.1.2)
Lus10019495
[exp]
93 / 1e-19 AT2G44660 717 / 0.0 ALG6, ALG8 glycosyltransferase family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03155 Alg6_Alg8 ALG6, ALG8 glycosyltransferase family
Representative CDS sequence
>Potri.017G114100.1 pacid=42814514 polypeptide=Potri.017G114100.1.p locus=Potri.017G114100 ID=Potri.017G114100.1.v4.1 annot-version=v4.1
ATGGAAAAGAAACAGAGAAAGAAAGTTAAAAACCCCATGTCAGAAACTGAAAGCAACGATCTTGATGACATCTCCTGCTTGTTTTTTCAAAAAGGAATAA
TGGGTTTATTTCTTTTAATCAGTATCTTCAGTCTCCTCCTCAGAGTTGCAGTTTCTCTCCATTCATATTCAGGTGCAGGCACTCCACCAAAATTTGGTGA
CTTTGAAGCTCAACGTCATTGGATGGAGATTACAACTAATTTACCAATTAAAGATTGGTACTTTAACACTACCAACAATGATTTAAGTTATTGGGGTCTT
GATTACCCTCCATTAACCGCTTACCAGAGTTACTTTCATGGTCTTTTTCTCAAGCATTTTGATCCAAACTCAGTCTCGTTGTTTACTTCTCGTGGTTATG
AGACACATTTTGGGAAGTTGCTAATGAGGTGGACAGTTTTATCATCTGATTTATTGATATTTTTCCCTGCTGTTCTGTATTTTGTTCTTGTGTATTACGG
GGGTAACCGGTCCGGTGGAAATAAGAGTGATGTAGCATGGCATATTGCTGTTATTTTAATCAATCCTTGCTTGATCTTAACTGATCATGGCCATTTTCAG
TATAATTGCATCAGTTTGGGCCTTACATTAGGTGCTGTTGCTGCTGTGCTCTCGCAGAAAGATCTTTTAGCTTGTGTTCTGTTCTGTCTCTCTCTTAACC
ATAAACAGATGAGTGCGTATTATGCACCAGCGTTTTTCAGCCATCTGTTTGGTAGCTGCTTAAGGCGTAAGAATCCCCCGCTAGAGGTTTTAAAATTGGG
CTTGACTGTCTTAGGAACATTTGCTATTGTTTGGTGGCCCTTCCTTCATTCAAGAGATGCCTTTTCTGTGGTTCTTTCACGGCTTGCTCCTTTTGAGAGA
GGTATATATGAAGATTATGTGGCTAACTTTTGGTGCTGCACCTCAGTTTTAATTAAGTGGAAGAGATTATTTACAACAAATTCTCTGAGGTTTCTCAGCT
TAGTCGCTACTATATTGACATTTCTGCCTTCAATGATTCAACAAATATGGTCTCCCAGCAGCAAAGGTTTTCTTTATGGGTTGCTGAATAGTTCTTTGGC
CTTCTACTTATTTTCATTCCAAGTTCATGAGAAGTCCATTCTGCTGCCGCTTCTGCCTGCAACCTTGTTGGCTATGGAATTGCCTGGTGTACTCTCTATG
TTATTAATGCATTCTGCATTGCTCTCTATGTTTCCTCTTCTGTGTCGTGACAAAATGGCTGTGCCTTATATGGCTCTTTACATGCTTTCCATCCTTCTTT
ATCTTGCACCTTGTGGAAAACAGCATATTAAAAGGCATCTTTCTAGGTCTATGATCACATTCTCAATTGTGATTTCATACCTGTGCTCCCTTGTTCTTCA
TATTATATACTTAACCATTCGCCCCCCTGAGAAGTATCCTTTCCTTTTTGAAGCAATGATCATGAATTTCTGCTTCTCTCATTTCTTAGCCTTTACTGTT
TATACCAACGCAAAGCAATGGATGTTGTCAAGACAATCTACATCAAGGGATAAAGAAAAGAAACTTAATTGA
AA sequence
>Potri.017G114100.1 pacid=42814514 polypeptide=Potri.017G114100.1.p locus=Potri.017G114100 ID=Potri.017G114100.1.v4.1 annot-version=v4.1
MEKKQRKKVKNPMSETESNDLDDISCLFFQKGIMGLFLLISIFSLLLRVAVSLHSYSGAGTPPKFGDFEAQRHWMEITTNLPIKDWYFNTTNNDLSYWGL
DYPPLTAYQSYFHGLFLKHFDPNSVSLFTSRGYETHFGKLLMRWTVLSSDLLIFFPAVLYFVLVYYGGNRSGGNKSDVAWHIAVILINPCLILTDHGHFQ
YNCISLGLTLGAVAAVLSQKDLLACVLFCLSLNHKQMSAYYAPAFFSHLFGSCLRRKNPPLEVLKLGLTVLGTFAIVWWPFLHSRDAFSVVLSRLAPFER
GIYEDYVANFWCCTSVLIKWKRLFTTNSLRFLSLVATILTFLPSMIQQIWSPSSKGFLYGLLNSSLAFYLFSFQVHEKSILLPLLPATLLAMELPGVLSM
LLMHSALLSMFPLLCRDKMAVPYMALYMLSILLYLAPCGKQHIKRHLSRSMITFSIVISYLCSLVLHIIYLTIRPPEKYPFLFEAMIMNFCFSHFLAFTV
YTNAKQWMLSRQSTSRDKEKKLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G38460 ALG6, ALG8 glycosyltransferase... Potri.017G114100
[exp]
0 1
AT1G63500 Protein kinase protein with te... Potri.003G126700
[exp]
2.23 0.8600
AT2G16390 DMS1, CHR35, DR... DEFECTIVE IN RNA-DIRECTED DNA ... Potri.009G120700
[exp]
5.00 0.7525
AT5G27550 P-loop containing nucleoside t... Potri.005G031850
[exp]
11.40 0.7873
AT3G12590 unknown protein Potri.008G052700
[exp]
11.61 0.7946
AT5G20420 CHR42 chromatin remodeling 42 (.1) Potri.010G183766
[exp]
12.72 0.7955
AT3G48470 EMB2423 embryo defective 2423 (.1) Potri.015G090700
[exp]
14.42 0.7941
AT1G78940 Protein kinase protein with ad... Potri.004G170742
[exp]
20.19 0.7856
AT1G17110 UBP15 ubiquitin-specific protease 15... Potri.011G095200
[exp]
20.34 0.7559 Pt-UBP15.2
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.010G154601
[exp]
20.49 0.7678
Potri.012G087601
[exp]
22.44 0.7204

Potri.017G114100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.