Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15270 260 / 5e-78 RNA-binding KH domain-containing protein (.1.2) AT1G14170 204 / 5e-58 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 196 / 1e-53 RNA-binding KH domain-containing protein (.1) AT4G18375 167 / 2e-44 RNA-binding KH domain-containing protein (.1.2) AT1G51580 167 / 6e-44 RNA-binding KH domain-containing protein (.1) AT5G53060 150 / 4e-38 RNA-binding KH domain-containing protein (.1.2) AT2G03110 96 / 1e-22 RNA binding;nucleic acid binding (.1) AT2G22600 100 / 8e-22 RNA-binding KH domain-containing protein (.1) AT5G64390 96 / 3e-20 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT3G04610 87 / 1e-17 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G085500 [exp] 280 / 1e-85 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 273 / 9e-83 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 245 / 3e-72 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 243 / 1e-71 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 191 / 3e-52 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G100201 [exp] 171 / 2e-49 AT5G15270 94 / 1e-22 RNA-binding KH domain-containing protein (.1.2) Potri.002G112200 [exp] 181 / 3e-48 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.011G082500 [exp] 174 / 3e-46 AT5G46190 525 / 5e-180 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 166 / 5e-43 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033557 [exp] 325 / 1e-104 AT5G15270 201 / 3e-59 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 284 / 4e-87 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 285 / 1e-86 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10037163 [exp] 233 / 1e-66 AT5G15270 491 / 1e-167 RNA-binding KH domain-containing protein (.1.2) Lus10036767 [exp] 226 / 6e-65 AT5G15270 483 / 2e-165 RNA-binding KH domain-containing protein (.1.2) Lus10017596 [exp] 212 / 1e-61 AT5G15270 169 / 2e-47 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 207 / 1e-57 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 204 / 2e-56 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10028237 [exp] 164 / 3e-42 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 160 / 8e-41 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.017G114400.1 pacid=42813390 polypeptide=Potri.017G114400.1.p locus=Potri.017G114400 ID=Potri.017G114400.1.v4.1 annot-version=v4.1 ATGGATGGGAATAGGCGGAAATATTTCAAGAAACCGGGAAACAATCTTTTTAAACGGAAAGGAGTGAGCAGTAGTAGGAAAGGAAAATGGAGCGACTCTC ACGGCGAAGAATGTTCAGGTGATGGTGATACTGTTTATAGGATACTCTGTCCTTCGAGAAAAATTGGGGGTGTTATTGGAAAGGGTGGGAATATAGTGAA AGCTCTAAGAGAAGAGACGCAATCGAAAATTACAGTGGCTGATTCTGTTCAGGGTTCGGATGAGAGAGTGATTATTATTTATAGTTCTTCTGATAAGCCT CCGAGGAAAATGGATGGCGATGAAGGTTTGCCTGCGGGGAATGGACAGCAGGAGGCCTTTGAGCCACATTGTGCTGCCCAGGATGCGCTTTTGAAAGTTC ATGACCGGATTGTTGAGGAGGATCTTTTTGGTGGGATGGCGTCGGATGATGATAATGACAACAATGTTGTCACCGCGAGACTTCTTGTTCCAAACAACAT GGTAGGTTGTGTTTTGGGAAAACGGGGAGATGTTATTCAGAGATTAAGAAGTGAGACTGGTGCGAACATACGTGTTCTTCCTGCTGATCATCTCCCTTCA TGTGCTATGGATACTGATGAATTGGTCCAGATCTCTGGAAAACCAGCTGTGGCAAAGAGGGCTCTTTATGAAATATCCATTCTATTGCATCAGAATCCGC GCAAGGACAAACTGCCAAGTGTTCCTATGCCTTATGGTGGTCGAACTTTTCATCCTCCTAGTGATTCCATGGCAAACATGCTTCCACCAGGAAATCCAAT GTGGCCTCATCGTAACTCCACTCCCCACAGTATGCCATGGATGGGGGAATATGGGAATCACCCTTCAGAATTTGGGCCAGGTGGTTTCAATGGTGTTCCT CCTGGACATGGCAGGGAGCCTTCAGCTGAGTTCTCAATGAAAATTTTGTGCTCTACTGGGAAGATTGGTGGGGTAATTGGGAAAGGAGGCTCTAATGTTA AGATTGTACAGCAGGAGACAGGAGCTAGTATTCATGTTGAGGATGCTTCAGCGGAGTCAGAAGAACGTGCAATTCGTGTCTCTGCTTTTGAGGGTCTCTG GAATCCGAGATCCCAAACCATTGATGCAATTCTTCAGCTTCAGGATAAAACAAGTGACTTTTCTGAAAAAGGTATGATAATTACTAGACTTCTGGTTCCT TCAAGTAAGGTTGGCTGCATCCTTGGACAAGGAGGTCAGGTTATCAATGAAATGAGAAGGAGATTGCAGGCAGACATTCGTGTTTACCCCAAAAATGATA AGCCTAAATGTGCATCTGATGATGAAGAGCTTGTACAGATATCTGGAAATTATGGTGTTGCTAAAGATGCTTTGGCAGAGATTGCATCCAGACTCAGAGC AAGAACTTTGCGTGATGCAAATGCTGGAACAGAACCTGGGCCTGCTGGACCTGTCCCAGGCTTTGGGCCGGCACGAAACTTACCAGGAAGAGGACCCCAA CCATCTGGTATGATGGCAGCTAGCAGCTCTGGTGGATATGAACCGCTCAGGGGTGGAAGACGTGATCATGAGCCTCAGAGCTATTCAGTTCCTCCAGCTG CTATGGGATACCCAAGTATGAACCGTGTTTTGGAGGCTGATAACTCTCGTAGTATGAACCGTGTTTTGGAGGCCAATAACTCACTTAATGGAATGAATTC TGTTATGCGATCTGGAGGGCGTGATGTTTCAATTACTGATGAGTTTGCTGGGAGAAGGGCAAAGCTTCAAGATCCTCATTATGGTAGTTCTGAAGTTGAG AATCATGGATCTTCCGAGCATTTGATTGCTGGACAAGGTTTTTATCAAGGCTTCATGGCCTCTGGTGGACAGAACATGAGTGCCCACCAGGGTTCCTACC AAAACAATGTAACAGCCCAGCAAAGCATGAATCCTCAGCGAGATACCTACCAAGCCATGAGTGCTCAGCAGGACCCTTACCAAAGCATCAGTGCTCAGCA GAGCACCTACCAAAACATGAATGCTCAGCAAAACACCTATCAAAACATGAATGCTCAGCCGAGCCCGCACCAAAATATGAGGGCACACCAAAGCCCCTAC TCCATGACCGCTCAGCAAGGTGTCTACACAAATATCAATGCTCCACCAAGCTCCTACAACAACAGTGCTCAGCAAGGCACTTACCAGTATTGA
AA sequence Show only first row Show all	>Potri.017G114400.1 pacid=42813390 polypeptide=Potri.017G114400.1.p locus=Potri.017G114400 ID=Potri.017G114400.1.v4.1 annot-version=v4.1 MDGNRRKYFKKPGNNLFKRKGVSSSRKGKWSDSHGEECSGDGDTVYRILCPSRKIGGVIGKGGNIVKALREETQSKITVADSVQGSDERVIIIYSSSDKP PRKMDGDEGLPAGNGQQEAFEPHCAAQDALLKVHDRIVEEDLFGGMASDDDNDNNVVTARLLVPNNMVGCVLGKRGDVIQRLRSETGANIRVLPADHLPS CAMDTDELVQISGKPAVAKRALYEISILLHQNPRKDKLPSVPMPYGGRTFHPPSDSMANMLPPGNPMWPHRNSTPHSMPWMGEYGNHPSEFGPGGFNGVP PGHGREPSAEFSMKILCSTGKIGGVIGKGGSNVKIVQQETGASIHVEDASAESEERAIRVSAFEGLWNPRSQTIDAILQLQDKTSDFSEKGMIITRLLVP SSKVGCILGQGGQVINEMRRRLQADIRVYPKNDKPKCASDDEELVQISGNYGVAKDALAEIASRLRARTLRDANAGTEPGPAGPVPGFGPARNLPGRGPQ PSGMMAASSSGGYEPLRGGRRDHEPQSYSVPPAAMGYPSMNRVLEADNSRSMNRVLEANNSLNGMNSVMRSGGRDVSITDEFAGRRAKLQDPHYGSSEVE NHGSSEHLIAGQGFYQGFMASGGQNMSAHQGSYQNNVTAQQSMNPQRDTYQAMSAQQDPYQSISAQQSTYQNMNAQQNTYQNMNAQPSPHQNMRAHQSPY SMTAQQGVYTNINAPPSSYNNSAQQGTYQY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15270			RNA-binding KH domain-containi...		Potri.017G114400 [exp]	0	1
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Potri.015G008700 [exp]	1.00	0.9151
AT5G38730			Tetratricopeptide repeat (TPR)...		Potri.017G108600 [exp]	2.00	0.8717
AT1G20300			Pentatricopeptide repeat (PPR)...		Potri.005G066700 [exp]	2.44	0.8746
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	8.24	0.8783
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	10.72	0.8643
AT5G16860			Tetratricopeptide repeat (TPR)...		Potri.012G041200 [exp]	12.00	0.8603
AT1G16350			Aldolase-type TIM barrel famil...		Potri.010G173600 [exp]	14.69	0.8487	IMPDH.3
AT4G13750		EMB2597, NOV	NO VEIN, EMBRYO DEFECTIVE 2597...		Potri.001G317200 [exp]	17.66	0.8473
AT1G30960			GTP-binding family protein (.1...		Potri.001G160800 [exp]	18.16	0.8097	Pt-ERG.1
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126780 [exp]	19.33	0.8529

Compare expression of checked genes

Potri.017G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.