Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67090 292 / 2e-102 RBCS1A ribulose bisphosphate carboxylase small chain 1A (.1.2) AT5G38430 285 / 1e-99 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT5G38420 284 / 3e-99 Ribulose bisphosphate carboxylase (small chain) family protein (.1) AT5G38410 283 / 6e-99 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G100000 [exp] 330 / 1e-117 AT1G67090 286 / 3e-100 ribulose bisphosphate carboxylase small chain 1A (.1.2) Potri.018G091401 [exp] 174 / 3e-56 AT5G38410 183 / 1e-59 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Potri.006G167901 [exp] 0 / 1 AT5G38410 0 / 1 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017597 [exp] 258 / 5e-89 AT5G38410 271 / 2e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10033558 [exp] 258 / 6e-89 AT5G38410 272 / 1e-94 Ribulose bisphosphate carboxylase (small chain) family protein (.1), Ribulose bisphosphate carboxylase (small chain) family protein (.2), Ribulose bisphosphate carboxylase (small chain) family protein (.3) Lus10028471 [exp] 254 / 2e-87 AT5G38420 265 / 1e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10009172 [exp] 250 / 7e-86 AT5G38420 264 / 2e-91 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10005093 [exp] 176 / 1e-56 AT5G38420 186 / 3e-60 Ribulose bisphosphate carboxylase (small chain) family protein (.1) Lus10034357 [exp] 169 / 7e-54 AT1G67090 182 / 7e-59 ribulose bisphosphate carboxylase small chain 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12338 [poplar] [flax] RbcS Ribulose-1,5-bisphosphate carboxylase small subunit
Representative CDS sequence Show only first row Show all	>Potri.017G114600.1 pacid=42813771 polypeptide=Potri.017G114600.1.p locus=Potri.017G114600 ID=Potri.017G114600.1.v4.1 annot-version=v4.1 ATGGCTTCCTCTGTGATTTCATCGGCGGCCGTTGCCACAGTTAACCGCACCCCTGCACAGGCCAACATGGTTGCACCATTCAACGGCCTCAAGTCTACCT CAGCTTTCCCGGTCACCAGAAAGGCTAACAATGACATTACTTCCATTGCAAGCAATGGCGGAAGAGTTCAATGCATGCAGGTGTGGCCTCCAACTGGATT GAAGAAGTTCGAGACTCTTTCTTACCTTCCAGATCTCACTACTGAGCAATTGGCCCAGGAAATTGAGTACCTTCTTCGCAACAAGTGGGTTCCTTGCTTG GAATTCGAGTTGGAGAAAGGTTGGGTCTACCGCGAGCACCACCAGTCCCCAGGGTACTATGATGGACGCTACTGGACTATGTGGAAACTACCCATGTTTG GATGCACTGAGGCATCTCAGGTGCTGATTGAGCTCGAGGAGGCGAAGAAAGCTTACCCTAACTCCTTTATCCGTATCATTGGATTCGACAACACTCGTCA AGTGCAGTGCATCAGTTTTATCGCCTCCAAGCCGAAGGGTGTCTAG
AA sequence Show only first row Show all	>Potri.017G114600.1 pacid=42813771 polypeptide=Potri.017G114600.1.p locus=Potri.017G114600 ID=Potri.017G114600.1.v4.1 annot-version=v4.1 MASSVISSAAVATVNRTPAQANMVAPFNGLKSTSAFPVTRKANNDITSIASNGGRVQCMQVWPPTGLKKFETLSYLPDLTTEQLAQEIEYLLRNKWVPCL EFELEKGWVYREHHQSPGYYDGRYWTMWKLPMFGCTEASQVLIELEEAKKAYPNSFIRIIGFDNTRQVQCISFIASKPKGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67090		RBCS1A	ribulose bisphosphate carboxyl...		Potri.017G114600 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.002G145100 [exp]	1.00	0.9866
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G109700 [exp]	1.41	0.9858	Pt-ALDH11.1
AT5G04590		SIR	sulfite reductase (.1)		Potri.009G052600 [exp]	2.44	0.9855
AT3G29240			Protein of unknown function (D...		Potri.004G125800 [exp]	3.00	0.9709
AT4G14890		FdC2	ferredoxin C 2, 2Fe-2S ferredo...		Potri.010G087300 [exp]	5.29	0.9838
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Potri.008G159400 [exp]	6.92	0.9710	Pt-APG1.1
AT5G64040		PSAN, PSI-N	photosystem I reaction center ...		Potri.005G063300 [exp]	7.41	0.9754
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Potri.016G020201 [exp]	8.48	0.9685
AT1G42970		GAPB	glyceraldehyde-3-phosphate deh...		Potri.002G007100 [exp]	8.94	0.9694
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Potri.009G067300 [exp]	9.16	0.9713

Compare expression of checked genes

Potri.017G114600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.