Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16120 518 / 0 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G77420 408 / 6e-142 alpha/beta-Hydrolases superfamily protein (.1) AT3G62860 303 / 7e-101 alpha/beta-Hydrolases superfamily protein (.1) AT2G39420 295 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1) AT2G39410 291 / 6e-97 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G47630 288 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) AT2G39400 276 / 4e-91 alpha/beta-Hydrolases superfamily protein (.1) AT3G55180 266 / 5e-87 alpha/beta-Hydrolases superfamily protein (.1) AT1G11090 258 / 1e-83 alpha/beta-Hydrolases superfamily protein (.1) AT3G55190 246 / 2e-79 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G124000 [exp] 413 / 3e-143 AT1G77420 510 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G212200 [exp] 290 / 2e-96 AT2G39420 462 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G129000 [exp] 286 / 2e-94 AT3G62860 499 / 5e-179 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G204200 [exp] 284 / 1e-93 AT2G47630 493 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G049000 [exp] 283 / 2e-93 AT2G39420 479 / 8e-172 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G046500 [exp] 259 / 4e-84 AT1G11090 461 / 1e-164 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G040000 [exp] 203 / 3e-62 AT5G19290 507 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G222300 [exp] 199 / 8e-61 AT5G19290 472 / 8e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G059200 [exp] 185 / 2e-55 AT1G52760 560 / 0.0 lysophospholipase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017601 [exp] 553 / 0 AT5G16120 514 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009169 [exp] 542 / 0 AT5G16120 490 / 2e-175 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10033561 [exp] 479 / 1e-169 AT5G16120 441 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017600 [exp] 441 / 8e-156 AT5G16120 409 / 5e-144 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10041441 [exp] 422 / 3e-147 AT1G77420 496 / 2e-176 alpha/beta-Hydrolases superfamily protein (.1) Lus10034331 [exp] 422 / 6e-147 AT1G77420 499 / 8e-178 alpha/beta-Hydrolases superfamily protein (.1) Lus10028475 [exp] 352 / 7e-122 AT5G16120 338 / 7e-117 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10007877 [exp] 300 / 3e-99 AT3G62860 501 / 2e-179 alpha/beta-Hydrolases superfamily protein (.1) Lus10040328 [exp] 296 / 8e-99 AT2G39420 468 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10023448 [exp] 290 / 2e-92 AT2G39420 459 / 2e-159 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.017G114800.1 pacid=42813332 polypeptide=Potri.017G114800.1.p locus=Potri.017G114800 ID=Potri.017G114800.1.v4.1 annot-version=v4.1 ATGTCTCTCCCACCCGCAAAACTCTCCAGTGGCCGCAGCTTCTTCGAAGGATGTGCTTGGTTCCAAGGAAAGGGGTGGAGGAGGCAAGGAAGGGAAAAAG CAGCAGCAGCAATGGCGTCACGTCCGGTGAGGTTTCCAGAAATCGACGATGAATTGAGAAAGATCATCGATGCTAACATGGATGAAGTGCCTGCAAGAAA ACGTGCTCGAGAGGCCTTTAAAGATATCCAGCTTGGAATTGACCATATCTTGTTCAAGACGCCATGTGATGGGTTGAAAATGGAGGAGTCGTATGAGGTG AATTCTAGAGGACTGGAAATTTTCACAAAGAGTTGGCTTCCTAAGTCTTCCTCCCCGAAAGCAGTGGTGTGTTTCTGTCATGGTTATGGAGACACATGCA CATTTTTTGTTGAAGGAATTGCAAGAAAGTTGGCATCATCTGGATATGGTTTTTTTGCTATGGATTATCCAGGATATGGTCTTTCTGAAGGTCTCCATGG CTATATCCCCAGCTTTGACAGGCTAGTTGACGATGTTATAGAACATTACTCCAAGGTCAAAGAGAAGCCAGAGTTTCGTACTCTACCTAGCTTCCTATTT GGAGAGTCGTTGGGTGGGGCTGTTGCTCTGAAGGTGCATTTAAAGCAACCCAATGCATGGAATGGTGCCATTCTTGTAGCTCCTATGTGCAAAATTGCAG ATGACATGACTCCACCATGGTTAGTGACACAAATTTTGATCGGTGTGGCCAATTTACTTCCAAAGCACAAGTTAGTTCCCCAAAAGGATTTGGCTGAGGC TGCTTTTAGGGATCCAAAGAACAGAAAACTGGCAGCCTATAATGTCATTGCATACAAGGACAAGCCCCGCTTGAAGACTGCACTAGAGATGCTCAGAACC ACTCAAGAAATAGAACGTCGACTAGAAGAAGTCTCTCTACCACTATTAATTCTTCATGGAGAGGCTGATATCGTAACCGATCCATCCGTGAGCAAGACTT TGCATGAGAAAGCATGCTGCTCGGACAAGAAACTAAAGTTATACAAGGATGCTTATCATGCTCTCCTGGAAGGCGAGCCAGATGAAATGATAATTCAAGT TTTCAATGATATCATTTCTTGGCTTGATGAACGTAGCAGAGAAACTAATTCTTGCTGA
AA sequence Show only first row Show all	>Potri.017G114800.1 pacid=42813332 polypeptide=Potri.017G114800.1.p locus=Potri.017G114800 ID=Potri.017G114800.1.v4.1 annot-version=v4.1 MSLPPAKLSSGRSFFEGCAWFQGKGWRRQGREKAAAAMASRPVRFPEIDDELRKIIDANMDEVPARKRAREAFKDIQLGIDHILFKTPCDGLKMEESYEV NSRGLEIFTKSWLPKSSSPKAVVCFCHGYGDTCTFFVEGIARKLASSGYGFFAMDYPGYGLSEGLHGYIPSFDRLVDDVIEHYSKVKEKPEFRTLPSFLF GESLGGAVALKVHLKQPNAWNGAILVAPMCKIADDMTPPWLVTQILIGVANLLPKHKLVPQKDLAEAAFRDPKNRKLAAYNVIAYKDKPRLKTALEMLRT TQEIERRLEEVSLPLLILHGEADIVTDPSVSKTLHEKACCSDKKLKLYKDAYHALLEGEPDEMIIQVFNDIISWLDERSRETNSC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16120			alpha/beta-Hydrolases superfam...		Potri.017G114800 [exp]	0	1
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Potri.003G170600 [exp]	1.00	0.8908
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.006G087800 [exp]	4.12	0.8142
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Potri.018G038100 [exp]	5.91	0.8358
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	7.61	0.8548
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Potri.001G378400 [exp]	12.64	0.8148	GA2ox1,GA2.7
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.002G002400 [exp]	12.96	0.8161
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411700 [exp]	14.49	0.8330
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.001G041800 [exp]	17.88	0.8271
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	18.00	0.8368	Pt-CRCK3.2
AT1G20670			DNA-binding bromodomain-contai...		Potri.004G206200 [exp]	18.70	0.8001

Compare expression of checked genes

Potri.017G114800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.