Plant FIBer expression Database

Potri.017G115002 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G099466
[exp]
52 / 4e-10 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02873 MurB_C UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain
Representative CDS sequence
>Potri.017G115002.1 pacid=42813928 polypeptide=Potri.017G115002.1.p locus=Potri.017G115002 ID=Potri.017G115002.1.v4.1 annot-version=v4.1
ATGAAGGACTATGCACCTATTGCTGCAGTAACTTTCCAACTGCAGGGCTCAAGAACAGCAAGAATAAGGCAACAAGAAGACTCTGATAGGAGGAGAACTC
AACCACTAAGCGAGTGTAGTGCTGGCTCGGTGTTTACAAATGCATCTGAATTTGGAGTTGCAGCAGCTGAGTTGATTGAGAAAAAGGTTTCAGAGTAG
AA sequence
>Potri.017G115002.1 pacid=42813928 polypeptide=Potri.017G115002.1.p locus=Potri.017G115002 ID=Potri.017G115002.1.v4.1 annot-version=v4.1
MKDYAPIAAVTFQLQGSRTARIRQQEDSDRRRTQPLSECSAGSVFTNASEFGVAAAELIEKKVSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.017G115002
[exp]
0 1
AT4G10590 UBP10 ubiquitin-specific protease 10... Potri.016G067400
[exp]
3.16 0.9140
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Potri.001G255950
[exp]
12.24 0.9271
AT1G80530 Major facilitator superfamily ... Potri.006G060900
[exp]
21.42 0.9090
AT4G34135 UGT73B2 UDP-glucosyltransferase 73B2 (... Potri.005G008050
[exp]
22.97 0.8963
AT5G01650 Tautomerase/MIF superfamily pr... Potri.016G126800
[exp]
30.39 0.8226
Potri.008G062800
[exp]
31.08 0.8689
AT1G22240 APUM8 pumilio 8 (.1) Potri.001G457700
[exp]
36.55 0.9045
AT5G27690 Heavy metal transport/detoxifi... Potri.002G206900
[exp]
36.74 0.8512
AT3G53810 Concanavalin A-like lectin pro... Potri.009G035400
[exp]
43.54 0.8204
AT4G10550 Subtilase family protein (.1.2... Potri.004G161400
[exp]
44.81 0.8158

Potri.017G115002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.