Plant FIBer expression Database

Potri.017G115100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74640 480 / 2e-170 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024219
[exp]
515 / 0 AT1G74640 499 / 2e-178 alpha/beta-Hydrolases superfamily protein (.1)
Lus10002055
[exp]
513 / 0 AT1G74640 502 / 3e-179 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Potri.017G115100.1 pacid=42814022 polypeptide=Potri.017G115100.1.p locus=Potri.017G115100 ID=Potri.017G115100.1.v4.1 annot-version=v4.1
ATGGCCATGGCCTCGTTGTTTATCTCTTCTTCACCATCTTTTACTCTCCCTCCTAAAACTTACACAAAATATCAAACAGCTTACTTTTTAAAACCCTTTT
CTCTCAAAGCTGCTTCCACATCTGTTGATCAACAACCCACAATCTCTTTAGCCGATAAACAGCCCTCCCCCTTTAAGGCAAATAGCTGGCAATGGAAATT
CCAGGACAAGGTTTTAACTATCTATTATGAAGAACATGGGAAGGAAAGCCCTGAACCAACCAAAAACATTTTAATGCTGCCAAGTATTTCTGATGTTAGC
ACTGTTGAAGAATGGAGATCGGTAGCTGGGAACATTGTTCAACGAGCCAGTAAAATCAATTGGAGGGCTGTAATTGTTGACTGGCCTGGTTTGGGCTATT
CTGATAGGCCTAAACTAGACTACAATGTTGATGTCATGGAGAAATTTCTGACAGACTTCATAAGTGCTCCAGATGGTCCAATGAAGCACTTTGGAAATGA
TTTAGTCATCTTTGGTGGAGGGCATGCACCCACAATTACTCTTTGTGCTGCAAAGAAGGGTTTGGTGAAGCTAGCAGCCATTGCTGCTGTTGCACCCACC
TGGGCTGGTCCTCTTCCTATTGTGTTTGGTCGAGATTCAACCATGGAAATGAGGTATGGGCTGCTAAGGGACACCTTAAGGACCCCAGGCGTTGGTTGGA
TGATGTATAACGTGCTTGTAAGCAACGAGAAGGCAATTGCATCACAGTACAGATCCCATGTCTATGCAAATCCTGACAATGTGACTCCTGATGTTGTTGA
TAGTAGAATTGCACTGACAAAACGAAAGGGAGCTCGTTACGCTCCTGCTTCTTTCTTGACAGGTCTCCTTGACCCAGTTAAATCCCAGGAGGAATTCCTT
GAGCTCTTCGCAGATTTGGATGGAAAAGTACCGGTTCTTGTTGTGTCAACCAAAAGTTCTCCAAAGAGGTCAAAAGCAGTAATGCAAGCACTCAAAGGAG
CCAAAGGGGTCAGTAAATTTGTTGAGGTTCCAGGCGCTCTTTTGCCACAGGAAGAGTATCCCACTATGATTGCAGAGGAGCTTTACCAATTTTTGCAAGA
AAATTTTGAATTTAACATTTGA
AA sequence
>Potri.017G115100.1 pacid=42814022 polypeptide=Potri.017G115100.1.p locus=Potri.017G115100 ID=Potri.017G115100.1.v4.1 annot-version=v4.1
MAMASLFISSSPSFTLPPKTYTKYQTAYFLKPFSLKAASTSVDQQPTISLADKQPSPFKANSWQWKFQDKVLTIYYEEHGKESPEPTKNILMLPSISDVS
TVEEWRSVAGNIVQRASKINWRAVIVDWPGLGYSDRPKLDYNVDVMEKFLTDFISAPDGPMKHFGNDLVIFGGGHAPTITLCAAKKGLVKLAAIAAVAPT
WAGPLPIVFGRDSTMEMRYGLLRDTLRTPGVGWMMYNVLVSNEKAIASQYRSHVYANPDNVTPDVVDSRIALTKRKGARYAPASFLTGLLDPVKSQEEFL
ELFADLDGKVPVLVVSTKSSPKRSKAVMQALKGAKGVSKFVEVPGALLPQEEYPTMIAEELYQFLQENFEFNI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74640 alpha/beta-Hydrolases superfam... Potri.017G115100
[exp]
0 1
AT5G10600 CYP81K2 "cytochrome P450, family 81, s... Potri.014G021400
[exp]
1.00 0.9656 Pt-IFS1.54
AT1G06460 ACD31.2, ACD32.... ALPHA-CRYSTALLIN DOMAIN 31.2, ... Potri.014G141500
[exp]
5.65 0.9504 Pt-ACD32.1
AT4G38970 FBA2 fructose-bisphosphate aldolase... Potri.007G015500
[exp]
6.92 0.9250
AT1G30260 AGL79 unknown protein Potri.011G081001
[exp]
8.12 0.9440
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.002G073000
[exp]
8.83 0.9534
AT4G36530 alpha/beta-Hydrolases superfam... Potri.005G121000
[exp]
12.12 0.9428
AT1G06690 NAD(P)-linked oxidoreductase s... Potri.002G055500
[exp]
13.30 0.9529
AT1G62850 Class I peptide chain release ... Potri.003G115300
[exp]
15.49 0.9215
AT1G75250 MYB RSM3, ATRL6 RADIALIS-LIKE SANT/MYB 3, RAD-... Potri.007G023800
[exp]
15.87 0.9292
AT4G23420 NAD(P)-binding Rossmann-fold s... Potri.015G146600
[exp]
16.00 0.9410

Potri.017G115100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.