Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38380 557 / 0 unknown protein AT2G04620 69 / 2e-12 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110300 [exp] 68 / 4e-12 AT2G04620 483 / 2e-158 Cation efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028477 [exp] 389 / 3e-136 AT5G38380 347 / 7e-120 unknown protein Lus10009167 [exp] 379 / 4e-131 AT5G38380 374 / 2e-129 unknown protein Lus10013358 [exp] 65 / 5e-11 AT2G04620 783 / 0.0 Cation efflux family protein (.1) Lus10004102 [exp] 64 / 1e-10 AT2G04620 784 / 0.0 Cation efflux family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G115200.1 pacid=42814176 polypeptide=Potri.017G115200.1.p locus=Potri.017G115200 ID=Potri.017G115200.1.v4.1 annot-version=v4.1 ATGATGACCCCAAGACAAATTAGTGAAGATCGAGGAGTAGGATCTTCTCCTCATTTTAGTCACACTCCATTGCAGATCATCCATGTTATTGGCAACTTCT TGAGAATATGGTCAGTTTATTCGATGTACCGCTATTTGTCTCAGACTGGAGCTTCGGTGGTACTTTTTATATTCAGTTGTTTGATTCCATCGTCAATCCT ATTTTTAGTTTTGCAAAAGCCTTGGAAGGGGAGAGCACTCTCTAATCAGCAGGTAGTTCCATCTGTTATAAATGGTGTGATAACAGCTTTGTACTTCATC TTGTGGGGAAAGGGACTTAAGTCGTGTGGACCAGTTAGAGCTATCTTGGCGGAGTATTCTGGTGCTGTTCTGGGAGTATTATCTGCTGCATTATATGGAC GGAAGGGCCATATCTGGAAAAAGGTTGGTGGGCTCATTGCGATGTTGGCGTCTTTCTACTTCTTGTCTCAAGGGTGGGCCATGGCCACATATTCACCCTT TACATTCAAAGATAGTCCTACTACTGAGGATCAGACAGAGGAAGTTTTAGGTATGGGAGAAATGGTAGTTCCAATTCTTGCTGGAATCTTATCAGCTCTA AGAAGGGTTATTGCACGCCGTGTTTCACTCAAGAATCAACTTAAAAGGAGGCTTAATGCAATAACCATTACTTCTGCGACCTGTTTTCTTTTTCCTGTGG CCATGTGGGACTTCATCATTGGATCAACTTCTGGCAGCAGTGTACAACTGCCGTTTTCAACCTGGGCATTTCTCAGCACTACTCTTTTTGGAGTTATCCT GATATTCTATGTTGACAGTATTGCAGAGGAGAGACTGCACATGGTGTTCTCTTCACCAAGGCACCTAATGGCAGCTGGAGGATGCATCATTGTCATGGAA ATTGTCTACAATATGGATTTTTCTCTTCCAGGCTTCATAATATGTTCCTTGATCTTGGGCTTTGGGATTTACGAGGCAACTGCTTTGGAGCGTGGTAAAA AGGGTTCTTTTCAGCAATCTGAACCATTGGATGGGGTGTTGGAAGATCAAGGTCAGATGTCCCCACTTCCTACTTGA
AA sequence Show only first row Show all	>Potri.017G115200.1 pacid=42814176 polypeptide=Potri.017G115200.1.p locus=Potri.017G115200 ID=Potri.017G115200.1.v4.1 annot-version=v4.1 MMTPRQISEDRGVGSSPHFSHTPLQIIHVIGNFLRIWSVYSMYRYLSQTGASVVLFIFSCLIPSSILFLVLQKPWKGRALSNQQVVPSVINGVITALYFI LWGKGLKSCGPVRAILAEYSGAVLGVLSAALYGRKGHIWKKVGGLIAMLASFYFLSQGWAMATYSPFTFKDSPTTEDQTEEVLGMGEMVVPILAGILSAL RRVIARRVSLKNQLKRRLNAITITSATCFLFPVAMWDFIIGSTSGSSVQLPFSTWAFLSTTLFGVILIFYVDSIAEERLHMVFSSPRHLMAAGGCIIVME IVYNMDFSLPGFIICSLILGFGIYEATALERGKKGSFQQSEPLDGVLEDQGQMSPLPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38380			unknown protein		Potri.017G115200 [exp]	0	1
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.006G077600 [exp]	4.58	0.6463	MBD902
AT3G52990			Pyruvate kinase family protein...		Potri.010G233200 [exp]	7.74	0.6759
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	8.48	0.6529
AT3G28370			unknown protein		Potri.001G350100 [exp]	14.96	0.5512
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Potri.010G241800 [exp]	16.97	0.6423
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	30.16	0.6690
AT4G23640		ATKT3, KUP4, TR...	TINY ROOT HAIR 1, Potassium tr...		Potri.003G133900 [exp]	40.79	0.6151
AT1G02160			Cox19 family protein (CHCH mot...		Potri.014G051850 [exp]	57.06	0.5392
					Potri.001G241254 [exp]	64.06	0.5440
AT2G44680		CKB4	casein kinase II beta subunit...		Potri.002G139900 [exp]	65.45	0.5459	CKB3.2

Compare expression of checked genes

Potri.017G115200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.