Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25330 150 / 1e-44 bHLH HAF, bHLH075, CESTA HALF FILLED, CESTA, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G18400 148 / 3e-43 bHLH bHLH044, BEE1 BR enhanced expression 1 (.1) AT1G73830 146 / 1e-42 bHLH bHLH050, BEE3 BR enhanced expression 3 (.1.2) AT1G68920 122 / 1e-31 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT3G07340 121 / 1e-31 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 118 / 1e-31 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G23690 119 / 2e-31 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 118 / 2e-31 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G59640 117 / 3e-31 bHLH ZCW32, bHLH031, BPE, BPEUB, BPEP BIG PETAL UB, BIG PETAL P (.1.2) AT5G48560 120 / 6e-31 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099400 [exp] 403 / 2e-143 AT1G18400 152 / 7e-45 BR enhanced expression 1 (.1) Potri.015G046300 [exp] 193 / 1e-60 AT1G18400 192 / 3e-60 BR enhanced expression 1 (.1) Potri.012G055700 [exp] 192 / 2e-60 AT1G73830 216 / 1e-69 BR enhanced expression 3 (.1.2) Potri.007G023600 [exp] 124 / 3e-33 AT2G18300 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G248500 [exp] 122 / 9e-32 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 122 / 2e-31 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 121 / 2e-31 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 121 / 2e-31 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G117300 [exp] 120 / 2e-31 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038939 [exp] 155 / 4e-46 AT1G73830 193 / 9e-61 BR enhanced expression 3 (.1.2) Lus10009673 [exp] 147 / 4e-43 AT1G73830 204 / 1e-65 BR enhanced expression 3 (.1.2) Lus10009034 [exp] 139 / 6e-40 AT1G73830 186 / 2e-58 BR enhanced expression 3 (.1.2) Lus10017602 [exp] 135 / 8e-39 AT1G18400 122 / 7e-34 BR enhanced expression 1 (.1) Lus10033562 [exp] 134 / 2e-38 AT1G18400 121 / 5e-34 BR enhanced expression 1 (.1) Lus10023562 [exp] 120 / 4e-32 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10026008 [exp] 119 / 5e-32 AT2G18300 168 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10014300 [exp] 119 / 1e-31 AT2G18300 171 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10040448 [exp] 119 / 1e-31 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10041261 [exp] 118 / 1e-31 AT3G23690 172 / 3e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.017G115300.1 pacid=42814582 polypeptide=Potri.017G115300.1.p locus=Potri.017G115300 ID=Potri.017G115300.1.v4.1 annot-version=v4.1 ATGGCTGAGTTTGCAGAATATCAGCAGAGGTTTAGGCCTTCTCAGCCTTTGACAGAGATGATGGACATGAACATGGAAATGCTCAAGCATCTTCCAGAGA TGAATCCAAGCATCTTGGAGAGTTTCAGCATCACTGACTTCTCAGCAGACTCTTTGTTGGCCCGCCAACAACCTGAATTTACAGCAACATATGATCACAA CAACCTTTCAAGTACTTTCCATCCTGACATCTTGAGTACAGCAACAGTTGTTCATACTGTTACCTTGAATCAAAATGATTCCCATGACAGCAAGAAGCGA AAATCAATGGAACAATCAACCAGCAGCTACATTTCTCCTACAGCCTCTACAAACGAAACAAAGAAAAAGAACAACCTAGGAGGAAGTAAGAAAGGTGAAA ACAAAGAGAAAGAAGGGGACAAAGCAGAGGAAGTTATTCATGTTAGAGCTAAAAGAGGCCAAGCAACAGACAGTCACAGTATAGCAGAAAGGGTAAGAAG AGAGAAAATCAATAACAAGTTAAGGTGCTTGCAAGATCTTGTTCCTGGATGCCACAGGTCAATGGGGATGGCAGTTATGCTAGAGGAGATAATCAATTAT GTACATTCATTGCAGAATCAAGTTGAGTTTCTTTCCATGGAGCTTGCAGCTGCAAGTAGTTCTAATGACCTGAACAATTTAACAGAATCTTCAAAGAGGG CTCAGGGAACAGACTCAACTGAAGCACAGAAGACACAGAAATGGTTGAGAGAAAGATATGGAGAAATCACTTGCTTCCACTCTGCATGGTCCATTTGA
AA sequence Show only first row Show all	>Potri.017G115300.1 pacid=42814582 polypeptide=Potri.017G115300.1.p locus=Potri.017G115300 ID=Potri.017G115300.1.v4.1 annot-version=v4.1 MAEFAEYQQRFRPSQPLTEMMDMNMEMLKHLPEMNPSILESFSITDFSADSLLARQQPEFTATYDHNNLSSTFHPDILSTATVVHTVTLNQNDSHDSKKR KSMEQSTSSYISPTASTNETKKKNNLGGSKKGENKEKEGDKAEEVIHVRAKRGQATDSHSIAERVRREKINNKLRCLQDLVPGCHRSMGMAVMLEEIINY VHSLQNQVEFLSMELAAASSSNDLNNLTESSKRAQGTDSTEAQKTQKWLRERYGEITCFHSAWSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25330	bHLH	HAF, bHLH075, C...	HALF FILLED, CESTA, basic heli...		Potri.017G115300 [exp]	0	1
AT3G27027			Protein of unknown function (D...		Potri.001G328701 [exp]	3.00	0.8337
AT5G53980	HD	ATHB52	homeobox protein 52 (.1)		Potri.017G016900 [exp]	8.36	0.7769
AT1G65780			P-loop containing nucleoside t...		Potri.017G140501 [exp]	10.09	0.8036
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026200 [exp]	11.31	0.7765
AT1G65780			P-loop containing nucleoside t...		Potri.017G140300 [exp]	12.84	0.7844
AT1G67910			unknown protein		Potri.008G186200 [exp]	15.96	0.7404
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025425 [exp]	18.16	0.7449
					Potri.001G098901 [exp]	18.97	0.7335
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Potri.018G058600 [exp]	22.49	0.7120
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.005G142600 [exp]	31.30	0.7042

Compare expression of checked genes

Potri.017G115300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.