Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02570 560 / 0 PMI1, MEE31 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1) AT1G67070 555 / 0 PMI2, DIN9 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099100 [exp] 785 / 0 AT1G67070 573 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033563 [exp] 614 / 0 AT1G67070 534 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10009165 [exp] 613 / 0 AT1G67070 540 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10028480 [exp] 611 / 0 AT1G67070 539 / 0.0 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1) Lus10017603 [exp] 529 / 0 AT3G02570 462 / 7e-162 PHOSPHOMANNOSE ISOMERASE 1, MATERNAL EFFECT EMBRYO ARREST 31, Mannose-6-phosphate isomerase, type I (.1) Lus10015062 [exp] 521 / 0 AT1G67070 505 / 1e-178 PHOSPHOMANNOSE ISOMERASE 2, DARK INDUCIBLE 9, Mannose-6-phosphate isomerase, type I (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF01238 [poplar] [flax] PMI_typeI Phosphomannose isomerase type I
Representative CDS sequence Show only first row Show all	>Potri.017G115500.1 pacid=42813443 polypeptide=Potri.017G115500.1.p locus=Potri.017G115500 ID=Potri.017G115500.1.v4.1 annot-version=v4.1 ATGGAGACTGAATTGAAGAACAACCACCAGGGAGGAGGACTGAAGAGACTTAGATGTTCAGTTCAAAACTATGATTGGGGTAAGAAAGGGACAGAAGGGT CCGAGGTTGCAAGGCTTTATGAATTGAATTCCGGGTATGATATAGCATTTGAAAAGAAGAAGCCTTTTGCTGAGTTTTGGGTGGGTACACATGGTTCTGG GCCTTCTTTTGTGGTGGAAGGTGGTGTGGAGAATGGGGACTCAAATGGGTCTGGGAGTTTGAGTTTGAAAGAATGGATTTGTAAGAATCCTAATGTGCTT GGTGATAAGGTTTTGGATAAGTGGGGTTGTGATCTTCCTTTCTTGTTCAAGGTGCTTTCTGTGGCAAAAGCATTGTCAATTCAGGCTCATCCAGACAAGG AATTGGCGAAAGTTCTACACAAGTTGCATCCAAATCTTTACAAGGATGACAATCATAAGCCCGAGATGGCTTTGGCTGTTACAGAGTTTGAAGCCCTCTG TAGTTTTATCAGCCTTGAGGAGCTTAAAGCTGTGCTTCGAGATGTTCCTGAGATTGTAGAACTGGTTGGCAGTGCAGAAGTAAACCAACTCTTGCAAATC AACGAGCAAGATCATGAGAAAAAAGTAAAATCTGTTCTGAGATCAGCCTTTACCCATCTCATGTCAGCAAGCAAAGAGATGACAGCTGACGTAATATCCA AATTAAAAAGCAGATTGTATACGGAAAGCGAGACAAGGCAGTTGACTGGAAAGGAACAGCTGGTCTTGCAGTTAGAAAAGCAATATCCAGCTGATATTGG TGTCATATCAGCCTTCTTTCTTAATTATGTGAAGCTCAATCCTGGTGAAGCTTTGTATCTCGGGGCAAATGAACCCCACGCATATCTACATGGCGAGTGT GTTGAATGCATGGCAACCTCAGACAATGTTGTGCGGGCTGGTCTTACGCCCAAGCACCTGGATATCCAAACTCTTTGTTCCATGCTCACATACAAACAGG GCTTTCCTGAAATCTTGAAAGGATTTCCACTGAGTCCATATATAACAAGATACCTTCCACCTTTCGATGAATTTGAGGTTGATCGCTGCATACTTCCAAG AGGGGCATCAACAGTGTTTCCTGCGATTCCAGGCCCTTCCATTTTTCTTGTCGTGGTTGGGGAGGGTACAATGTGCACAGAATCATCCAAAGATGTAGTT ATGGAAGGAGATGCCCTTTTCGCACCTGCCAACACTGAGATTAGCGTATCAACTCCATCTGAATTGCATCTGTATAGGGCTGGAGTGAATAGCAGATTCT TTCAAATCTTGTGA
AA sequence Show only first row Show all	>Potri.017G115500.1 pacid=42813443 polypeptide=Potri.017G115500.1.p locus=Potri.017G115500 ID=Potri.017G115500.1.v4.1 annot-version=v4.1 METELKNNHQGGGLKRLRCSVQNYDWGKKGTEGSEVARLYELNSGYDIAFEKKKPFAEFWVGTHGSGPSFVVEGGVENGDSNGSGSLSLKEWICKNPNVL GDKVLDKWGCDLPFLFKVLSVAKALSIQAHPDKELAKVLHKLHPNLYKDDNHKPEMALAVTEFEALCSFISLEELKAVLRDVPEIVELVGSAEVNQLLQI NEQDHEKKVKSVLRSAFTHLMSASKEMTADVISKLKSRLYTESETRQLTGKEQLVLQLEKQYPADIGVISAFFLNYVKLNPGEALYLGANEPHAYLHGEC VECMATSDNVVRAGLTPKHLDIQTLCSMLTYKQGFPEILKGFPLSPYITRYLPPFDEFEVDRCILPRGASTVFPAIPGPSIFLVVVGEGTMCTESSKDVV MEGDALFAPANTEISVSTPSELHLYRAGVNSRFFQIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02570		PMI1, MEE31	PHOSPHOMANNOSE ISOMERASE 1, MA...		Potri.017G115500 [exp]	0	1
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Potri.006G167200 [exp]	7.74	0.7139	PSC450.2
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.006G126800 [exp]	8.48	0.7432	PAL3,Pt-PAL1.2
AT1G05790			lipase class 3 family protein ...		Potri.002G231450 [exp]	8.66	0.6622
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.004G033600 [exp]	13.63	0.7423	STP1.1
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081400 [exp]	21.81	0.7058
AT1G32410			Vacuolar protein sorting 55 (V...		Potri.003G087500 [exp]	24.00	0.7027
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.005G011200 [exp]	29.93	0.7162
AT5G23130			Peptidoglycan-binding LysM dom...		Potri.012G036600 [exp]	31.49	0.6542
					Potri.001G210150 [exp]	35.07	0.6932
AT5G18460			Protein of Unknown Function (D...		Potri.019G024100 [exp]	37.78	0.7137

Compare expression of checked genes

Potri.017G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.