Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18410 156 / 5e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G099000 [exp] 283 / 2e-95 AT2G18410 369 / 1e-126 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009164 [exp] 223 / 5e-71 AT2G18410 364 / 3e-123 unknown protein Lus10028481 [exp] 220 / 7e-71 AT2G18410 348 / 1e-118 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G115566.1 pacid=42813879 polypeptide=Potri.017G115566.1.p locus=Potri.017G115566 ID=Potri.017G115566.1.v4.1 annot-version=v4.1 ATGGCAGAATCTATGTGTAGAACTCTCCGAGATGGATCATTAGAAGGGGAGCAAGCACCAACCCTCACAATCAGAGACACCACAGCTTCGCCGTTTGGTT TCCACGTTTTCTCTCACGTTCTCTCTCAGCTCTCCTCTTTCATTTTAGCCTCCAAATCCCAGTCCCGTTGTATTGTAATTGTTGCATTTTCACGGAGCCC GTCCTTTTACGTTGATTTACTGAAGAGACGAGGAATTGATGCAAAATCATCTCATAAATGCATTCAGATTTTGGATTGCTATTCGGATCCGCTTGGTTGG AAGGATCAGCTTATGATGTCGGGAAATTTCACGGATGTTTCCTATGAAGTTTCTTTGAGTTTGAGTTGTGTTTGTAGGAATGTGAAGGATTTGGACAAGT TGTACTCTTTGATTCTTGAACTGGGGAAAGGATTGGTTGGGCAAGGAAAAGATTGTTTTTCTGTTGCCATTGATTCGCTTGAGCAGACATGCTCACATGG ATGGAGAGCTGCCATGGACCCTGTATGGTCATGTGATGCTGCCTGCTCATATGTCAGTGCCTATGGAAGCCTGGAGAATTTGTTGATTGATATCCAAATC ATTGTCCTTATTTCTTGA
AA sequence Show only first row Show all	>Potri.017G115566.1 pacid=42813879 polypeptide=Potri.017G115566.1.p locus=Potri.017G115566 ID=Potri.017G115566.1.v4.1 annot-version=v4.1 MAESMCRTLRDGSLEGEQAPTLTIRDTTASPFGFHVFSHVLSQLSSFILASKSQSRCIVIVAFSRSPSFYVDLLKRRGIDAKSSHKCIQILDCYSDPLGW KDQLMMSGNFTDVSYEVSLSLSCVCRNVKDLDKLYSLILELGKGLVGQGKDCFSVAIDSLEQTCSHGWRAAMDPVWSCDAACSYVSAYGSLENLLIDIQI IVLIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18410			unknown protein		Potri.017G115566 [exp]	0	1
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.014G004000 [exp]	2.00	0.8736
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G100800 [exp]	4.00	0.7973
AT2G45320			unknown protein		Potri.014G068500 [exp]	6.32	0.8101
AT1G80900		MRS2-10, ATMGT1	magnesium transporter 1 (.1)		Potri.007G098000 [exp]	12.00	0.8442
AT3G18210			2-oxoglutarate (2OG) and Fe(II...		Potri.012G051200 [exp]	13.41	0.8109
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.010G023500 [exp]	18.52	0.7575
AT1G11270			F-box and associated interacti...		Potri.007G074084 [exp]	18.97	0.7158
AT5G22820			ARM repeat superfamily protein...		Potri.009G151100 [exp]	19.59	0.7579
AT3G28370			unknown protein		Potri.017G074100 [exp]	19.89	0.8097
AT3G45740			hydrolase family protein / HAD...		Potri.008G045700 [exp]	21.67	0.7587

Compare expression of checked genes

Potri.017G115566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.