Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67050 112 / 5e-30 unknown protein AT1G68330 63 / 1e-11 unknown protein AT1G48780 53 / 3e-08 unknown protein AT5G38320 51 / 9e-08 unknown protein AT3G18300 41 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G098700 [exp] 321 / 8e-112 AT1G67050 117 / 6e-32 unknown protein Potri.008G122300 [exp] 133 / 8e-38 AT1G68330 134 / 6e-38 unknown protein Potri.010G122800 [exp] 124 / 3e-34 AT1G68330 136 / 7e-39 unknown protein Potri.015G045700 [exp] 94 / 8e-23 AT1G48780 107 / 8e-28 unknown protein Potri.012G055300 [exp] 62 / 3e-11 AT1G48780 105 / 2e-27 unknown protein Potri.017G115801 [exp] 58 / 7e-10 AT1G67050 51 / 1e-07 unknown protein Potri.004G098501 [exp] 49 / 2e-06 AT5G20480 64 / 5e-11 EF-TU receptor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009160 [exp] 142 / 4e-41 AT1G67050 152 / 1e-44 unknown protein Lus10028485 [exp] 116 / 3e-31 AT1G67050 160 / 8e-48 unknown protein Lus10041430 [exp] 67 / 7e-13 AT1G68330 111 / 4e-29 unknown protein Lus10034341 [exp] 66 / 2e-12 AT1G68330 117 / 4e-31 unknown protein Lus10009004 [exp] 50 / 6e-07 AT1G48780 98 / 7e-24 unknown protein Lus10009633 [exp] 43 / 9e-05 AT1G48780 93 / 5e-22 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G115700.1 pacid=42814279 polypeptide=Potri.017G115700.1.p locus=Potri.017G115700 ID=Potri.017G115700.1.v4.1 annot-version=v4.1 ATGGCAATTGAACTCTGTCCAGAAAGTTCCGCTGGTGTTAGTCCAAGAATTTCGTTTTCTCATGATCTTTGCGTACCGGATATTGTTCCTTTTGAACAAC GCCTCCCTCTTCGATCAGGTTCATTAGGTAACATTGATTTCGACTTCTGCGCCGTCCGAAAGAGTTTCGACTCATCGTCAGCAGACGAGCTTTTCTCTGA TGGAAAAATTCTTCCCACTGAAATCAAGAAAAAGACTGCTTCTGCTAAACAAATGGATTCGTCTGTGCCCTCAAGACAAGTCCTACAAGATGATGTTTCG TGCAATGATAGTCTGAAGAAAGACCGCTTGAAAGAAATGAAGAGTTCGAGTAATTATGAAGCAGAAGATCAAAAGCAAAGTTCAAAATCTTTTTGGAGTT TCAAGAGGAGTAGTAGCTTGAATTGTGCCAGTGGTTATGGAAAAAGTTTGTGTCATTTGCCACTCTTATCGCGAAGCTACTCTGCTGGTTCAACACCAAG AAGTAAGCGAGCCCCATTAACGAAAGACACTAACCATAAGCAGAATAAACAAGCATTTTTCAAGTCATCACAATCGTCGTCTACGAAGAATTACCAGAAG CCTCCGTTGAAGAAGAACTATGGACCTTATGGAAATGGTGTTCGTGTCAGTCCAGTTCTGAATGTTCCATCAGGGAATCTATTTGGTTTAGGTTCAATCT TCTTCAATGGAAAAGATAAGAAGAACATGAAGAAGTGA
AA sequence Show only first row Show all	>Potri.017G115700.1 pacid=42814279 polypeptide=Potri.017G115700.1.p locus=Potri.017G115700 ID=Potri.017G115700.1.v4.1 annot-version=v4.1 MAIELCPESSAGVSPRISFSHDLCVPDIVPFEQRLPLRSGSLGNIDFDFCAVRKSFDSSSADELFSDGKILPTEIKKKTASAKQMDSSVPSRQVLQDDVS CNDSLKKDRLKEMKSSSNYEAEDQKQSSKSFWSFKRSSSLNCASGYGKSLCHLPLLSRSYSAGSTPRSKRAPLTKDTNHKQNKQAFFKSSQSSSTKNYQK PPLKKNYGPYGNGVRVSPVLNVPSGNLFGLGSIFFNGKDKKNMKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67050			unknown protein		Potri.017G115700 [exp]	0	1
AT5G47740			Adenine nucleotide alpha hydro...		Potri.012G084700 [exp]	1.00	0.8898
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002300 [exp]	2.00	0.8876
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	6.24	0.8795	Pt-BRI1.1
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022000 [exp]	7.07	0.8580	Pt-LOX1.6
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.001G314800 [exp]	7.87	0.8223
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.017G048200 [exp]	8.36	0.8730
AT2G41250			Haloacid dehalogenase-like hyd...		Potri.016G037600 [exp]	8.60	0.8187
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Potri.002G254900 [exp]	9.89	0.8489	FDH1
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	17.54	0.8568
					Potri.017G128500 [exp]	17.74	0.8472

Compare expression of checked genes

Potri.017G115700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.