Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 810 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 784 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 778 / 0 EFR EF-TU receptor (.1) AT3G47580 778 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 735 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 473 / 1e-150 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 462 / 1e-144 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 452 / 4e-140 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT5G65700 439 / 2e-137 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT4G20140 442 / 2e-136 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G080000 [exp] 1265 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 1264 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 1263 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 1234 / 0 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 1214 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228300 [exp] 1204 / 0 AT3G47570 743 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 1196 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 1184 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 1167 / 0 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 937 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 930 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 925 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 910 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 907 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 901 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 900 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 896 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 894 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 892 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.017G115900.1 pacid=42813646 polypeptide=Potri.017G115900.1.p locus=Potri.017G115900 ID=Potri.017G115900.1.v4.1 annot-version=v4.1 ATGATGCTGCCTGGCACGAGTTCATGGATATTGTGGCCAATCTTCTTGCAAATATATCTACTCGTTTCTTTTTCCTTCTCGATATATGGAGGAAATGAGA CCGACAAACTCTCCCTGCTAACTTTTAAAGCTCAAATAACAGGCGACCCCCTTGGTAAGCTAAGCTCGTGGAATGAATCGTCACAATTCTGCCAGTGGTC AGGTGTTACTTGTGGACGCCGCCATCAAAGGGTTGTGGAGCTTGACCTACACTCTTACCAGCTAGTGGGCAGCCTATCTCCCCACATAGGCAACTTGAGT TTCCTCAGGATATTAAACTTGGCAAATAATAGCTTAAGCCTTTATATCCCTCAAGAGTTAGGTCGTTTGTTTCGTCTGGAGGAGTTGGTCCTCAGGAACA ACACGTTCGATGGTGGAATCCCTGCCAACATCTCGCGTTGTGCAAACCTCCGAATCCTTGATTTCAGTAGAGGCAATTTGACAGGCAAACTTCCTGCCGA ACTTGGGTTATTATCAAAGTTGCAGGTACTGACTATTGAACTCAATAATTTTGTTGGCGAGATACCATATTCTTTTGGAAATCTGTCAGCTATCAATGCA ATTTATGGATCCATAAATAATTTGGAAGGAAGTATTCCGAATGTTTTTGGACAATTGAAACGATTAAAAATACTCTCGCTTGGTGCAAATAATCTGTCTG GCATGATTCCTCCTTCTATATTCAATCTCTCTTCTCTTACTCTACTATCTTTCCCAGTTAACCAGCTTTATGGGAGTCTTCCTCATACCTTAGGCCTAAC TCTTCCAAACCTTCAAGTGTTTAATATCCACACTAACCAATTCGGTGGGCTAATTCCGGCAACTTTCTCTAATGCCTCAAATCTCCTTTCTTTTCAAATT GGAAGTAACAACTTCAATGGAAAAGTTCCACCACTGTCAAGCTCACATGATTTGCAAGTTTTGGGTGTTGGTGATAATAATCTGGGAAAAGGTGAAAATA ATGACTTGAATTTTGTCTATCCTTTAGCAAATAACATGACTAGTTTGGAGGCTTTGGATACAAGTGATAACAATTTTGGAGGGGTGCTTCCTGAAATAGT AAGCAACTTCTCCACAAAGCTAATGAAGATGACATTTGCGAGGAATCAAATCCGTGGGAGCATTCCAACCCAAATTGGAAACCTCATCAACTTGGAGGCT TTAGGGTTGGAAACAAATCAATTGACTGGCATGATACCAAGTTCTATGGGGAAACTACAGAAGCTGAGTGATCTATTTCTTAATGGAAACAAAATCTCTG GGATGATCCCATCTTCAATGGGGAACATGACTTCTTTAGGGAGAGTTAACATGAGACTCAATAATTTAGAGGGAAGCATTCCACCAAGTCTGGGAAATTG GCAGAAGTTATTGTCCTTGGCTCTCTCGCAAAATAATTTGAGTGGTCCCATTCCAAAAGAACTAGTTAGTATTCCATCCTTATCAATGTACTTAGTACTA TCGGAGAATGAGCTGACTGGATCTCTTCCGATAGAAATGGAGAAGTTGGTGAATCTTGGATATCTGGACGTTTCTAAAAACAGGTTTTCTGGAGAAATTC CTAAAAGTCTTGGTAGTTGTGTGAGTTTGGAAAGTTTGCATTTGGAGGAAAACTTTTTGCAAGGGCCAATCCCTATCACTTTGAGTTCTTTAAGAGCAAT TCAAGAACTTAATCTCTCCTACAACAACCTGACAGGCCAAATTCCTGAGTTCTTGGAGGACTTTAAGTTATTGGAGAGTCTGAATCTGTCTTTTAATGAC TTTGAAGGTGAGGTGCCAGTCCAAGGAGCCTTTCAGAATACAAGTGCAATTTCTATTTTCGGAAACAAGAAGCTTTGTGGAGGAATACCCCAGTTAAATC TGACCAGATGCCCATCCAGTGAGCCAACGAATTCGAAATCTCCCACCAAGCTGATATGGATAATCGGAAGTGTTTGTGGCTTTCTGGGAGTAATCTTGAT CATCTCTTTCTTGCTTTTCTATTGCTTCAGAAAGAAGAAAGATAAGCCTGCTGCTTCTCAACCTTCATTGGAGACCTCATTTCCTAGAGTAGCCTATGAA GATCTCCTCGGGGCAACTGATGGGTTCTCTTCAGCAAATTTAATTGGTGAAGGTAGTTTTGGGTCTGTCTTCAAAGGAATTCTCGGACCAGATAAAATAG TCGTTGCAGTGAAAGTTCTCAACCTTCTACGTAAAGGAGCCTCCAAAAGTTTTATGGCAGAATGTGAAGCTTTGAAGAGCATCAGGCATCGGAATCTTGT CAAGTTATTGACTACATGTTCTAGCATTGATTTCCAAGGTAATGATTTTAAAGCTCTAGTTTACGAGTTCATGGTCAATGGAAGTCTAGAAGAGTGGTTG CATCCAGTTCAAACATCAGACGAGGCAAACGAGCCAAAAGCTTTGGATCTCATGCATAGGTTAAACATTGCAATTCATATGGCTAGCGCACTGGACTATT TGCATCACGATTGTCAAATGCCTATCATTCATTGCGATTTGAAGCCGAGCAATATTCTTCTAGACACTAACATGACTGCTCATGTTGGAGACTTTGGATT AGCAAGGTTCCATTCAGAAGCTTCAAATCAAACTAGCTCTGTTGGTTTGAAAGGCACCATCGGCTACGCAGCCCCAGAATATGGTATCGGAGGCAAGGTG TCCACTTACGGTGATGTTTACAGCTATGGCATCCTATTGTTGGAGATGTTTACAGGAAAGAGGCCTGTAGATGGCATGTTCAAAGATGGGCTGAACCTTC ACAGCTATGCTAAAATGGCACTGCCAGACCGCATTGTCGAAGTCGTGGATCCGTTACTTGTGAGAGAAATCCGAAGTGTCAATTCCTCTGACGAAATGGA CCTGTACCATATTGGACCTCACGAAATATTTGCATGTTTGATGACAATTATCAAGATGGGAGTTGCTTGTTCAGTAGAACTTCCAAGAGAGAGGATGGAC ATTGGCGATGTTGTGACTGAACTGAATCGAATCAAAGACACTCTTCTTGGAACTAGGATGCGCGCATAG
AA sequence Show only first row Show all	>Potri.017G115900.1 pacid=42813646 polypeptide=Potri.017G115900.1.p locus=Potri.017G115900 ID=Potri.017G115900.1.v4.1 annot-version=v4.1 MMLPGTSSWILWPIFLQIYLLVSFSFSIYGGNETDKLSLLTFKAQITGDPLGKLSSWNESSQFCQWSGVTCGRRHQRVVELDLHSYQLVGSLSPHIGNLS FLRILNLANNSLSLYIPQELGRLFRLEELVLRNNTFDGGIPANISRCANLRILDFSRGNLTGKLPAELGLLSKLQVLTIELNNFVGEIPYSFGNLSAINA IYGSINNLEGSIPNVFGQLKRLKILSLGANNLSGMIPPSIFNLSSLTLLSFPVNQLYGSLPHTLGLTLPNLQVFNIHTNQFGGLIPATFSNASNLLSFQI GSNNFNGKVPPLSSSHDLQVLGVGDNNLGKGENNDLNFVYPLANNMTSLEALDTSDNNFGGVLPEIVSNFSTKLMKMTFARNQIRGSIPTQIGNLINLEA LGLETNQLTGMIPSSMGKLQKLSDLFLNGNKISGMIPSSMGNMTSLGRVNMRLNNLEGSIPPSLGNWQKLLSLALSQNNLSGPIPKELVSIPSLSMYLVL SENELTGSLPIEMEKLVNLGYLDVSKNRFSGEIPKSLGSCVSLESLHLEENFLQGPIPITLSSLRAIQELNLSYNNLTGQIPEFLEDFKLLESLNLSFND FEGEVPVQGAFQNTSAISIFGNKKLCGGIPQLNLTRCPSSEPTNSKSPTKLIWIIGSVCGFLGVILIISFLLFYCFRKKKDKPAASQPSLETSFPRVAYE DLLGATDGFSSANLIGEGSFGSVFKGILGPDKIVVAVKVLNLLRKGASKSFMAECEALKSIRHRNLVKLLTTCSSIDFQGNDFKALVYEFMVNGSLEEWL HPVQTSDEANEPKALDLMHRLNIAIHMASALDYLHHDCQMPIIHCDLKPSNILLDTNMTAHVGDFGLARFHSEASNQTSSVGLKGTIGYAAPEYGIGGKV STYGDVYSYGILLLEMFTGKRPVDGMFKDGLNLHSYAKMALPDRIVEVVDPLLVREIRSVNSSDEMDLYHIGPHEIFACLMTIIKMGVACSVELPRERMD IGDVVTELNRIKDTLLGTRMRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G115900 [exp]	0	1
					Potri.001G141801 [exp]	1.41	0.9591
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Potri.011G046600 [exp]	12.16	0.9093
AT1G68190	CO		B-box zinc finger family prote...		Potri.008G125200 [exp]	15.29	0.8905
AT3G07350			Protein of unknown function (D...		Potri.009G144600 [exp]	20.09	0.8987
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Potri.002G192600 [exp]	20.97	0.9535
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Potri.015G087700 [exp]	25.09	0.9486
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.004G179100 [exp]	25.74	0.8937
AT3G21720		ICL	isocitrate lyase (.1)		Potri.017G036900 [exp]	28.70	0.9524	ICL1.1
					Potri.012G100300 [exp]	30.85	0.9430
AT3G21720		ICL	isocitrate lyase (.1)		Potri.007G122900 [exp]	35.32	0.9491	Pt-ICL1.2

Compare expression of checked genes

Potri.017G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.