Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68360 99 / 5e-25 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 97 / 2e-24 C2H2ZnF ZFP6 zinc finger protein 6 (.1) AT3G58070 63 / 1e-11 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G41940 62 / 3e-11 C2H2ZnF ZFP8 zinc finger protein 8 (.1) AT5G06650 59 / 1e-10 C2H2ZnF GIS2 GLABROUS INFLORESCENCE STEMS 2, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G80730 59 / 2e-10 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT1G10480 59 / 2e-10 C2H2ZnF ZFP5 zinc finger protein 5 (.1) AT5G25160 57 / 9e-10 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT1G24625 56 / 1e-09 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT5G10970 57 / 2e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097900 [exp] 305 / 5e-106 AT1G67030 100 / 2e-26 zinc finger protein 6 (.1) Potri.010G122400 [exp] 112 / 3e-30 AT1G68360 149 / 2e-44 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G123100 [exp] 102 / 4e-26 AT1G68360 123 / 4e-34 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G195100 [exp] 69 / 5e-14 AT3G58070 156 / 4e-47 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.016G060600 [exp] 69 / 6e-14 AT2G41940 155 / 1e-46 zinc finger protein 8 (.1) Potri.010G140700 [exp] 66 / 5e-13 AT5G14010 66 / 9e-14 KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G193400 [exp] 66 / 9e-13 AT1G10480 69 / 9e-14 zinc finger protein 5 (.1) Potri.002G199200 [exp] 65 / 1e-12 AT1G67030 71 / 2e-15 zinc finger protein 6 (.1) Potri.010G036400 [exp] 62 / 2e-11 AT1G10480 69 / 4e-14 zinc finger protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017609 [exp] 96 / 5e-24 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10033567 [exp] 92 / 1e-22 AT1G67030 113 / 2e-31 zinc finger protein 6 (.1) Lus10029204 [exp] 72 / 5e-15 AT1G68360 71 / 2e-14 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10018328 [exp] 64 / 2e-12 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017125 [exp] 62 / 9e-12 AT5G10970 95 / 4e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10017229 [exp] 60 / 5e-11 AT3G58070 120 / 5e-34 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10014350 [exp] 60 / 2e-10 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10021081 [exp] 58 / 8e-10 AT3G58070 147 / 3e-43 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10016238 [exp] 57 / 8e-10 AT3G58070 118 / 1e-32 GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10026121 [exp] 56 / 4e-09 AT5G10970 85 / 1e-18 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF13912 [poplar] [flax] zf-C2H2_6 C2H2-type zinc finger
Representative CDS sequence Show only first row Show all	>Potri.017G116300.1 pacid=42813754 polypeptide=Potri.017G116300.1.p locus=Potri.017G116300 ID=Potri.017G116300.1.v4.1 annot-version=v4.1 ATGCGATCACCCCCTAGCTCACTGATCGTCATAATTCGAACTCTTTTTTGCAGGCAGGCTCTCTCTTTTTCTCTCATGGATAGTATTGGCTGTCTCACAA AATCTAGTACCATCACTAGCAACAACACAACCCTAAAACTATTTGGCTTCAACATTTCAGAGAACACCCCTACCGTACCTTTAGATTCAAGCAAATCTCC ATCTGGGTCACAAGAACCAGAGAGTAGTTTCCAATCCTCCAAAGGGAGGAAATATGAGTGTCAATATTGTTACCGTGAGTTTGCAAACTCTCAAGCCTTG GGCGGTCATCAAAACGCTCACAAGAAAGAAAGGCAGCTTTTAAAACGTGCACAAATGCAAGCCACCCGCCGCCTGGCTTTAGCTTCCTATGTTACCATAC CAAATTCCATGTTCTCGACGTTTATTCCATCGCCACCGCACCTCCTTGATCCGGCTGTGGTTCCGGTGGAAGCAGCGAGGCAACAACACGCCCACTCTCC TCCATGGTTTTACAAGTCCTACTTGGGCCGCATGTCGCGTGACGGCCGATACCTTAACGGGCCTCCTTCTATTCCCGGAAGGTGTCTGGATGGAAAGAGC AACTTGGTTTGCAGTGAGGCTGGGCTTCGTGCTAGAGCTTTTCCTGTGAGTGGATTTGCTAGAGAAGATGTTGAGCCTCATCACCGTCACAAGGGATTAG GCTTGGATTTGCATCTGTAG
AA sequence Show only first row Show all	>Potri.017G116300.1 pacid=42813754 polypeptide=Potri.017G116300.1.p locus=Potri.017G116300 ID=Potri.017G116300.1.v4.1 annot-version=v4.1 MRSPPSSLIVIIRTLFCRQALSFSLMDSIGCLTKSSTITSNNTTLKLFGFNISENTPTVPLDSSKSPSGSQEPESSFQSSKGRKYECQYCYREFANSQAL GGHQNAHKKERQLLKRAQMQATRRLALASYVTIPNSMFSTFIPSPPHLLDPAVVPVEAARQQHAHSPPWFYKSYLGRMSRDGRYLNGPPSIPGRCLDGKS NLVCSEAGLRARAFPVSGFAREDVEPHHRHKGLGLDLHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.017G116300 [exp]	0	1
AT2G44290			Bifunctional inhibitor/lipid-t...		Potri.006G195700 [exp]	6.92	0.9168
AT1G58100	TCP	TCP8	TCP domain protein 8, TCP fami...		Potri.004G222100 [exp]	8.00	0.9018
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.004G215100 [exp]	13.78	0.8946
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.018G021400 [exp]	16.85	0.8969
AT3G12720	MYB	ATMYB67, AtY53	myb domain protein 67 (.1)		Potri.008G081600 [exp]	17.57	0.8991
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.007G007900 [exp]	17.60	0.8793
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.011G156600 [exp]	18.16	0.8783
AT3G18170			Glycosyltransferase family 61 ...		Potri.015G042300 [exp]	26.03	0.8898
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Potri.005G234200 [exp]	26.53	0.8510
AT5G43120			ARM-repeat/Tetratricopeptide r...		Potri.007G052300 [exp]	27.11	0.8875

Compare expression of checked genes

Potri.017G116300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.