Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16150 476 / 1e-166 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) AT1G05030 228 / 4e-70 Major facilitator superfamily protein (.1) AT1G67300 211 / 3e-64 Major facilitator superfamily protein (.1.2) AT1G79820 206 / 6e-62 SGB1 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) AT2G43330 159 / 2e-44 ATINT1 inositol transporter 1 (.1) AT1G54730 147 / 3e-40 Major facilitator superfamily protein (.1.2.3) AT3G05150 146 / 6e-40 Major facilitator superfamily protein (.1) AT2G16130 135 / 1e-35 ATPMT2, AtPLT2 ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 2, polyol/monosaccharide transporter 2 (.1) AT2G48020 133 / 6e-35 Major facilitator superfamily protein (.1.2) AT5G18840 132 / 1e-34 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097800 [exp] 541 / 0 AT5G16150 656 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Potri.014G060800 [exp] 231 / 2e-71 AT1G05030 752 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185300 [exp] 229 / 4e-71 AT1G79820 723 / 0.0 SUPPRESSOR OF G PROTEIN BETA1, Major facilitator superfamily protein (.1.2.3.4) Potri.018G083200 [exp] 209 / 3e-63 AT1G67300 710 / 0.0 Major facilitator superfamily protein (.1.2) Potri.010G026500 [exp] 148 / 2e-40 AT5G18840 686 / 0.0 Major facilitator superfamily protein (.1) Potri.017G032200 [exp] 148 / 3e-40 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G024300 [exp] 145 / 2e-39 AT1G75220 702 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Potri.013G135200 [exp] 145 / 4e-39 AT2G20780 747 / 0.0 Major facilitator superfamily protein (.1) Potri.013G027500 [exp] 144 / 7e-39 AT1G54730 606 / 0.0 Major facilitator superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009158 [exp] 494 / 2e-173 AT5G16150 781 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10028486 [exp] 493 / 3e-173 AT5G16150 780 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10017610 [exp] 492 / 3e-172 AT5G16150 756 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10033568 [exp] 479 / 2e-167 AT5G16150 763 / 0.0 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3) Lus10035315 [exp] 223 / 3e-68 AT1G05030 673 / 0.0 Major facilitator superfamily protein (.1) Lus10030010 [exp] 202 / 2e-60 AT1G05030 645 / 0.0 Major facilitator superfamily protein (.1) Lus10034930 [exp] 182 / 6e-53 AT1G67300 615 / 0.0 Major facilitator superfamily protein (.1.2) Lus10031637 [exp] 148 / 6e-40 AT2G20780 693 / 0.0 Major facilitator superfamily protein (.1) Lus10001656 [exp] 145 / 2e-39 AT1G75220 707 / 0.0 ERD6-like 6, Major facilitator superfamily protein (.1) Lus10025565 [exp] 145 / 2e-39 AT2G43330 768 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.017G116400.2 pacid=42812883 polypeptide=Potri.017G116400.2.p locus=Potri.017G116400 ID=Potri.017G116400.2.v4.1 annot-version=v4.1 ATGATAATTGGGCGTCTACTTGCTGGTATAGGAATTGGTATTTCTTCTGCTATCGTGCCACTTTACATATCTGAGATCTCGCCAACTGAAATCCGTGGTG CGCTGGGGTCTGTAAACCAACTTTTTATATGCATTGGGATTCTTTTGGCATTGGTAGCGGGATTGCCATTGGCAGGAAATCCTATATGGTGGAGGACAAT GTTTGGCATTTCAGCTGTTCCTGCTGTTCTATTGGCACTGGGAATGGCATTTTCTCCAGAAAGTCCTCGGTGGCTTTTTCAGCAAGGAAAATTTTCTGAA GCTGAAAAATCCATAATGACGCTTTATGGAAAAGAAAGAGTTGCTGATGTCATGACCGATTTAAATGTGGCTAGTCAAGGTTCTGCTGAGCAAGAAGCTG GATGGTTTGACCTGTTTAGCAGCCGCTATTGGAAAGTTGTGAGCGTTGGTGTAGCACTTTTCTTTTTCCAACAAATGGCTGGGATAAATGCTGTGGTGTA TTATTCAACTGCCGTGTTCCGTAGTGCTGGCATTGAATCAGATGTTGCTGCCAGTGCTCTTGTTGGGGCATCAAACGTCTTTGGTACAACTATTGCATCT TCCTTAATGGACAGGCAAGGAAGGAAGAGTCTTCTGATCACTAGCTTTTTTGGAATGGCTGCCTCAATGCTGCTGCTTTCCTTGTCCTTCACTTGGAAGG CCCTAGCACCATATTCTGGAACCCTAGCTGTTCTAGGGACAGTTTGCTATGTGTTGTCGTTTTCACTTGGTGCTGGTCCTGTGCCTGCTCTTCTTCTCCC AGAGATATTTGCCTCCAGAATTAGAGCAAAAGCAGTCGCCTTATCCTTGGGCATGCACTGGGCTGCAAATTTTGTCATCGGCCTGTATTTCTTGAGCTTT GTGAACAAGTTTGGGATCAGCTCTGTATATTTAGGATTTTCAGGCATCTGTCTTCTTGGTGTCTTGTACATAGCAGCTAATGTTGTGGAAACGAAGGGAC GTTCATTAGAAGAAATAGAACGAGCTCTTGACCCTGCAATTTAA
AA sequence Show only first row Show all	>Potri.017G116400.2 pacid=42812883 polypeptide=Potri.017G116400.2.p locus=Potri.017G116400 ID=Potri.017G116400.2.v4.1 annot-version=v4.1 MIIGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILLALVAGLPLAGNPIWWRTMFGISAVPAVLLALGMAFSPESPRWLFQQGKFSE AEKSIMTLYGKERVADVMTDLNVASQGSAEQEAGWFDLFSSRYWKVVSVGVALFFFQQMAGINAVVYYSTAVFRSAGIESDVAASALVGASNVFGTTIAS SLMDRQGRKSLLITSFFGMAASMLLLSLSFTWKALAPYSGTLAVLGTVCYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWAANFVIGLYFLSF VNKFGISSVYLGFSGICLLGVLYIAANVVETKGRSLEEIERALDPAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Potri.017G116400 [exp]	0	1
AT3G48200			unknown protein		Potri.012G087400 [exp]	2.82	0.8741
AT4G15790			unknown protein		Potri.008G207500 [exp]	8.42	0.8800
AT1G63640			P-loop nucleoside triphosphate...		Potri.003G127800 [exp]	9.16	0.8554
AT1G32860			Glycosyl hydrolase superfamily...		Potri.011G152400 [exp]	19.20	0.8445
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	20.78	0.8387
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	22.36	0.8512
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	26.94	0.8326
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.019G037600 [exp]	27.60	0.8496
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	31.01	0.8384
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093900 [exp]	33.98	0.8345

Compare expression of checked genes

Potri.017G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.