Plant FIBer expression Database

Potri.017G116500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G16160 82 / 8e-21 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.017G116500.3 pacid=42814161 polypeptide=Potri.017G116500.3.p locus=Potri.017G116500 ID=Potri.017G116500.3.v4.1 annot-version=v4.1
ATGCTTAAGAAAGGAGAGGAAGAAGACGAGAAAAGAGAAGAAGCTATAGCATCAAACCCATCTTTGCAGCCGAATTTCAAGCCCAAACGTGTCACTCAAG
ACCAGCTTTCCAAGCTACAAGAGCTACACAAAAGGCGCTTACAAATAAAATCAAAGATTCATAAGAAATCAAAAGATGGTACTGGCAAATCTCATGGAAA
AGACCTCAAAAGCAAAAAATCTCATGGAAAAGACCTCAAAAGCAAAGATACGGGCACGAACATTGAAGACTCAGGTGCTCCTGACTTGAAACCCCTTGAT
GACAATGCCAGTTTCTCTACTCCACAAGACAATGTGTCGGCACATCATTCAGAAAAGAAACGCCAGAAATTACACTGGGGGCTTGATACAAAGGAAAGAT
GGGAGAGAAAAGCCAATATGTAG
AA sequence
>Potri.017G116500.3 pacid=42814161 polypeptide=Potri.017G116500.3.p locus=Potri.017G116500 ID=Potri.017G116500.3.v4.1 annot-version=v4.1
MLKKGEEEDEKREEAIASNPSLQPNFKPKRVTQDQLSKLQELHKRRLQIKSKIHKKSKDGTGKSHGKDLKSKKSHGKDLKSKDTGTNIEDSGAPDLKPLD
DNASFSTPQDNVSAHHSEKKRQKLHWGLDTKERWERKANM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G16160 unknown protein Potri.017G116500
[exp]
0 1
AT4G13520 SMAP1 small acidic protein 1 (.1) Potri.010G063100
[exp]
13.26 0.7195
AT1G19690 NAD(P)-binding Rossmann-fold s... Potri.002G031500
[exp]
25.74 0.6665
AT3G21310 Core-2/I-branching beta-1,6-N-... Potri.001G195900
[exp]
29.69 0.6706
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Potri.014G153800
[exp]
30.03 0.6835
AT5G59140 BTB/POZ domain-containing prot... Potri.009G037800
[exp]
34.49 0.6559
AT2G04340 unknown protein Potri.014G169500
[exp]
39.76 0.6782
Potri.007G026601
[exp]
84.00 0.6551
AT4G14660 NRPE7 RNA polymerase Rpb7-like, N-te... Potri.010G077300
[exp]
103.59 0.6673
AT3G03330 NAD(P)-binding Rossmann-fold s... Potri.013G084100
[exp]
107.23 0.6155
AT5G50870 UBC27 ubiquitin-conjugating enzyme 2... Potri.012G104100
[exp]
110.99 0.6065

Potri.017G116500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.