Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16180 639 / 0 CRS1, ATCRS1 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) AT3G18390 426 / 8e-137 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 362 / 7e-113 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 362 / 3e-111 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G23070 355 / 1e-109 ATCFM3A CRM family member 3A (.1) AT4G14510 346 / 6e-106 ATCFM3B CRM family member 3B (.1) AT4G13070 65 / 8e-11 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G25440 65 / 9e-11 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT2G28480 59 / 6e-09 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) AT3G27550 49 / 1e-05 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056100 [exp] 411 / 8e-132 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 364 / 7e-113 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 352 / 2e-107 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.006G148901 [exp] 131 / 1e-33 AT4G29750 314 / 4e-101 CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.013G083000 [exp] 66 / 2e-11 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 65 / 1e-10 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.007G129600 [exp] 54 / 3e-07 AT2G28480 403 / 1e-139 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G343700 [exp] 50 / 7e-06 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.001G423800 [exp] 45 / 0.0001 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033576 [exp] 689 / 0 AT5G16180 665 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10009031 [exp] 404 / 1e-128 AT3G18390 882 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10009671 [exp] 396 / 1e-125 AT3G18390 872 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10022091 [exp] 360 / 3e-110 AT3G23070 860 / 0.0 CRM family member 3A (.1) Lus10001187 [exp] 363 / 7e-109 AT3G23070 879 / 0.0 CRM family member 3A (.1) Lus10039467 [exp] 338 / 3e-102 AT3G01370 939 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10027610 [exp] 333 / 9e-102 AT4G29750 676 / 0.0 CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10017618 [exp] 235 / 2e-69 AT5G16180 252 / 1e-76 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Lus10039451 [exp] 222 / 2e-64 AT3G01370 426 / 4e-140 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Lus10040896 [exp] 70 / 2e-12 AT4G13070 336 / 2e-114 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [poplar] [flax] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Potri.017G116700.2 pacid=42813029 polypeptide=Potri.017G116700.2.p locus=Potri.017G116700 ID=Potri.017G116700.2.v4.1 annot-version=v4.1 ATGGCTTCGTCAGCTCTGTGTCTCAAATTTTTCTCCTCTTACACTCCTATAACATCTGCCTTAAACCCAACAACAAAAAAGCATGGTAATACTACCTTAA ACAATGCCCAGATAACAACCCCTTTATTTATGTTTGCAAACAACAACAACAAAGAACTTGCGGTGTTAACAAACCCCATTTCGCAATCCAATGCCACCAC CACTGTTACAGTGCCAACACCTCCATGGATAAAGGGTCCTCTCATTCTCCAACCCCACGAACTCCTTAACCTCACCAACCCCAAAAACAAGAAGCCAATA AAGAATGACAAGATTGAAAAAGATGACAAGGCTTTGACTGCTAAAGAAAGTGGGGTTAGAGGCAATAAAGCAATGATACAGATTGTTAAAAGTGTTGAAA GACTGCAAAGAGATGAAAACTTGAAGGACACCCAAGAGATTTCTGAGAGTGGAGAGAGTTTAAAGCAGCTCGGAAAAGAAAGGATTTTAAGTGTTTTCGG TGATAAAAGGATTGTAAGAAGTATTGAAAAACTCCAAAAAGATCAAAACTTGAAGGAAACCCCAGTGAATTCTGGGGGTTTTGACATTGGAGAGGGTTTA AAACAGCTTAACGGAGATGGGGTTTTAGGGTTTAGGGAAAAAAAGCTGCCATGGGTGAGAGAAGAGAGAGTTGGGAATTGGAGAATGAAAAAAGAGAAGG TGGTTAGCAAGGCCGAGTTGAGTCTTGATAAGGAGTTACTTGAGAGATTGAGAGGAGAGGCTGCAAAGATGAGGACTTGGGTAAAGGTGAAGAAAGCTGG GGTGACACAGAGTGTAGTTGATGAGATAAGATTGACTTGGAGAACGAGTGAGCTGGCCATGATTAAATTCTATATGCCTTTGTGTAGAAATATGAATAGA GCAAGAGATATTGTTGAGATGAAGACAGGAGGCTTGGTTGTTTGGACCAGAAAAGATATTCATGTTGTTTATAGAGGATGCAATTATCAGTGGAAGAAAA ACTTTAATACAGCTACAATCGAGGAAAGTTTTCCCAGAAATGGTGGAGAAGAAGAGTCTATATCAGCTGGCATCTTAATGGAAGCAGATTTGAATACACA ACCAATTAATGGATCACTGTTTGAGAGAGAAACTGATAGATTATTAGATGGCTTAGGACCTCGTTTTGTTGATTGGTGGATGCGAAAGCCATTGCCAGTA GATGCAGATTTGCTTCCAGAAGTAGTTAAAGGATTCAGGTCTCCATCAAGGCTTTGTCCTCCACGAATGAGATCAAAGTTGAAAGATGATGAACTGACAT ACTTGAGAAAGCTTGCTCAATCTCTACCCACACATTTTGTCCTTGGGAGGAACAGAAGACTTCAAGGCCTAGCTGCTGCTATCTTAAAGTTGTGGGAAAA GACTATTATAGCTAAAATTGCTGTGAAGTGGGGAGTTCCAAATACCAATAATGAGCAAATGGCAGATGAGCTTAAGAGTCTCACTGGAGGAGTTCTGCTG CTTCGGAATAAGTTCTTTATAATACTTTATAGAGGCAAAGACTTTCTTCCTGGCCAAGTTGCAAATGTAATAGTGGACAGAGAAATTGCCCTTAGAAAAT GCCAAACCAACGAAGAAGGTGCAAGAATGAAAGCAATTGAAACTTCTTATATGCCTGGCGGACCAACCAACACAAGCAGATGTGGAACTTTATATGAATT TCAGGAATTCCAAATCAAATTTCAGAAGACGGCGAAAGGGGACTCTGAAATTCAATTAGAAGCTTATAAGGAAAAACTAGAGAGGGAATTGCGGAATCAA GAATACAGGCTTCGCATTCTTAAAAGTAAGATAGAGAAGCCAGCGAAGGACTTGTCAAAGTTGAATTCTGCATGGGTACCTAGTCCACGGGATGCAGACC AAGGAATAATGACAGAAGAGGAAAGAGAATGCTTCCGGAAGATAGGACTGAAGCTACGTGGTAGCTTAGTGCTTGGGAGGCGTGGGGTCTTTGAGGGTGT TATGGAAGGTCTGCATCAGCACTGGAAGCACAGAGAAGTGGTGAAGGTGATTACAATGCAGAGAGTGTTTTCCCAGGTCATTCACACTGCAACATTGCTT GAAGCAGAAAGTGACGGGATCCTAGTTTCAGTGGACAAGCTAAAAGAAGGTCATGCCATAATTATTTACCGTGGAAAAAATTACAAACGCCCTCTAAGGC TTCTAAAGAAGAATCTTTTAACTAAAAGAGAAGCATTAAAGAGATCTCTTCTAATTCAGAGAGTTGGGTCGTTGAAGTATTTTGCAAATCAGAGAGAGCG TGTGATCTCAGATTTGAAACTCAAACTGGTAGAGCTTCATGGATCCAAGGAAAAACATCTTAAAAGTGATACACTCTAA
AA sequence Show only first row Show all	>Potri.017G116700.2 pacid=42813029 polypeptide=Potri.017G116700.2.p locus=Potri.017G116700 ID=Potri.017G116700.2.v4.1 annot-version=v4.1 MASSALCLKFFSSYTPITSALNPTTKKHGNTTLNNAQITTPLFMFANNNNKELAVLTNPISQSNATTTVTVPTPPWIKGPLILQPHELLNLTNPKNKKPI KNDKIEKDDKALTAKESGVRGNKAMIQIVKSVERLQRDENLKDTQEISESGESLKQLGKERILSVFGDKRIVRSIEKLQKDQNLKETPVNSGGFDIGEGL KQLNGDGVLGFREKKLPWVREERVGNWRMKKEKVVSKAELSLDKELLERLRGEAAKMRTWVKVKKAGVTQSVVDEIRLTWRTSELAMIKFYMPLCRNMNR ARDIVEMKTGGLVVWTRKDIHVVYRGCNYQWKKNFNTATIEESFPRNGGEEESISAGILMEADLNTQPINGSLFERETDRLLDGLGPRFVDWWMRKPLPV DADLLPEVVKGFRSPSRLCPPRMRSKLKDDELTYLRKLAQSLPTHFVLGRNRRLQGLAAAILKLWEKTIIAKIAVKWGVPNTNNEQMADELKSLTGGVLL LRNKFFIILYRGKDFLPGQVANVIVDREIALRKCQTNEEGARMKAIETSYMPGGPTNTSRCGTLYEFQEFQIKFQKTAKGDSEIQLEAYKEKLERELRNQ EYRLRILKSKIEKPAKDLSKLNSAWVPSPRDADQGIMTEEERECFRKIGLKLRGSLVLGRRGVFEGVMEGLHQHWKHREVVKVITMQRVFSQVIHTATLL EAESDGILVSVDKLKEGHAIIIYRGKNYKRPLRLLKKNLLTKREALKRSLLIQRVGSLKYFANQRERVISDLKLKLVELHGSKEKHLKSDTL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Potri.017G116700 [exp]	0	1
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014300 [exp]	2.00	0.9098
AT1G13940			Plant protein of unknown funct...		Potri.010G162000 [exp]	4.24	0.8802
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.014G144900 [exp]	4.69	0.8849	Pt-KUP3.1
AT3G22330		ATRH53, PMH2	putative mitochondrial RNA hel...		Potri.016G023100 [exp]	7.14	0.9035
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046200 [exp]	7.87	0.8328
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Potri.017G036400 [exp]	8.36	0.8859
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	8.36	0.8875
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Potri.003G158100 [exp]	9.79	0.8939
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Potri.003G050600 [exp]	10.09	0.8885
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	10.19	0.8579

Compare expression of checked genes

Potri.017G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.