Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66910 478 / 6e-161 Protein kinase superfamily protein (.1) AT1G67000 482 / 8e-160 Protein kinase superfamily protein (.1) AT5G38260 468 / 3e-157 Protein kinase superfamily protein (.1) AT1G66930 448 / 3e-149 Protein kinase superfamily protein (.1) AT1G66920 406 / 1e-133 Protein kinase superfamily protein (.1.2) AT5G38280 402 / 1e-131 PR5K PR5-like receptor kinase (.1) AT1G70250 395 / 3e-127 receptor serine/threonine kinase, putative (.1) AT4G18250 396 / 4e-127 receptor serine/threonine kinase, putative (.1) AT5G39030 356 / 2e-112 Protein kinase superfamily protein (.1) AT5G39020 356 / 3e-112 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117340 [exp] 696 / 0 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1) Potri.017G117120 [exp] 650 / 0 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.017G117285 [exp] 579 / 0 AT1G66920 439 / 2e-146 Protein kinase superfamily protein (.1.2) Potri.017G117065 [exp] 572 / 0 AT1G66920 449 / 3e-150 Protein kinase superfamily protein (.1.2) Potri.017G117010 [exp] 565 / 0 AT5G38260 398 / 3e-130 Protein kinase superfamily protein (.1) Potri.004G097000 [exp] 551 / 0 AT5G38260 410 / 5e-135 Protein kinase superfamily protein (.1) Potri.004G076500 [exp] 532 / 0 AT5G38260 409 / 1e-134 Protein kinase superfamily protein (.1) Potri.004G076100 [exp] 519 / 3e-177 AT5G38260 401 / 9e-132 Protein kinase superfamily protein (.1) Potri.010G120950 [exp] 516 / 3e-176 AT5G38260 371 / 3e-120 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039725 [exp] 377 / 1e-121 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10025553 [exp] 367 / 7e-118 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10014924 [exp] 356 / 5e-114 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10014923 [exp] 339 / 4e-108 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10025545 [exp] 330 / 4e-108 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10025492 [exp] 341 / 5e-108 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10026761 [exp] 336 / 1e-107 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10022359 [exp] 334 / 4e-106 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025547 [exp] 333 / 6e-106 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10008335 [exp] 330 / 3e-103 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G116900.6 pacid=42813466 polypeptide=Potri.017G116900.6.p locus=Potri.017G116900 ID=Potri.017G116900.6.v4.1 annot-version=v4.1 ATGCATCCACATCTCCTTCAAACCATCTCTTTACCTCTCACAGTAATTACCATCATCATTATTGCAATTCCAATTTCTCTATGTGAACCTGATGAGCGAT ATCTAAGCTGCAGCAAGTCATTTGAGTGTGGAAACATTCAGAATATAACCTATCCTTTCTGGGGAGTGAATCGTCCTCAGTACTGTGGCTACCCAGGATT TCATCTTGATTGCAGTGGTGACGCCCCAGTGATTAAAATATCGGAAGTGGCGTACCAAGTCCTAGAGATCAAAAGCATGTCTCGAGTTCATCTCATTTCA ACAGAGTACACAGACAACATTTGTTCTATCCCCCCTGTCAACTCCACTTTTGATTCCGACCGTTTCAGTTATGCTTCAAATACTAAGAATATAATGCTGT ACTATGGATGTCCAACGATTCCAAGTCAATTTTTACCAACTTTAGGGCTATCCTATCAGTTCAGTTGCAACATAAGCAGAACTGATATGGTAGGTTACTA TCTGACAAGGAACCTGAGCATGTCAGCCACTGGTAGCTTTGCTGCTAACATAAGCAGTTACCTGGAGTCATGTAATCACAGCGTTCTCATTCCAGCATAT GAATCCGCTGTTCGATCAATAGAGAGCCATCCAACTGCTGCAAATTTGACAAATGCTCTTCATCGGGGTTTTTGGTTGCAGTGGACTGCAAATGATTCCT TGTGTAACAAATGCAAATTTTCTGGTGGGCAGTGTGGATACAATACCGATACTAGTAAATTCACTTGCTATTGTCAAGACCAGCCTTATGCAACTACTTG CAAGAAAGAGTCTTATAGATGGGAATATAAGCTTATTAAAGTTGTAACGTTAGCTATGTACACGATGATAGCAGTCACTATCATTGTGCTCTGCTCTAGA AGAGGATTATCTAGAGGCCGGATGACTAGCTTTTGGAGGCAGAATGCTCAACATAATCTAAATATTGAAACGATCATTATGAACTCGCATTCTCTTACTC CAAAACGCTATACATATTCAGAAATTAAGAAAATGACCAACTCATTCGTGGATAAACTAGGTCAAGGCGGATTTGGAGGTGTATACAAAGGAGAGTTACC GGATGGCCGTCCTGTGGCAGTAAAAGTCCTGAAGAATTCCAAAGGTGATGGAGAAGAGTTTGTTAATGAAGTTGTGAGTATTAGTAGAACTTCTCACGTA AATATAGTTACCCTTTTCGGGTTTTGCTTTGAAAGGACTAAAAGAGCTTTGATCTATGAATACATGCCGAATGGATCTCTAGACAAGTTCATATATCGTC AGACCTCTCTTCATGGAAACCATAATTTACAATGGGAAAAATTATATGAAATTGCTGTCGGCATTGGTAGAGGTCTTGAGTACTTGCATAGAGGTTGTAA CACTAGGATTGTTCATTTTGACATAAAACCTCACAACATTCTCTTAGACACAGATTTCTGTCCAAAAATATCTGATTTTGGTCTGGCAAAGCTATGCAAG AGAGAAGAAAGTATGGTTTCAATGACAGGTGCAAGAGGGACTGCAGGGTATATAGCTCCAGAAGTATTCTGCAAAAACTTTGGAGGAGTTTCTTACAAGT CTGATGTGTATAGTTACGGGATGATGGTTCTTGAAATGGTTGGAGGAAAAAGAAACATTGATATCGGAGAATCTCAAAGTAGTGAAATATTCCTTCCAAA TTGTATGTATGAATCAGAAGAGGTGTCTAGTCTCCATGGTGTTATAACAGATGAAACAGAAGAGACGATAAAAAAGATGGTTACGGTGGGTTTGTGGTGT GTTCAAACCAATCCATTAGATAGACCATCAATGACAAAGGTGGTGGAGATGTTAGAAGGCAGTCTTCAATTCTTGCAAACTCCACCAAAGCCTTTCCTGT ATTCTCCGACAACATCACTGGAAACGAACCTCACCGCATCAACCTCAAGAGCATGTGCATTGTCACAAAACGTAAGTGGCATGGCTGCCATTAGTTAA
AA sequence Show only first row Show all	>Potri.017G116900.6 pacid=42813466 polypeptide=Potri.017G116900.6.p locus=Potri.017G116900 ID=Potri.017G116900.6.v4.1 annot-version=v4.1 MHPHLLQTISLPLTVITIIIIAIPISLCEPDERYLSCSKSFECGNIQNITYPFWGVNRPQYCGYPGFHLDCSGDAPVIKISEVAYQVLEIKSMSRVHLIS TEYTDNICSIPPVNSTFDSDRFSYASNTKNIMLYYGCPTIPSQFLPTLGLSYQFSCNISRTDMVGYYLTRNLSMSATGSFAANISSYLESCNHSVLIPAY ESAVRSIESHPTAANLTNALHRGFWLQWTANDSLCNKCKFSGGQCGYNTDTSKFTCYCQDQPYATTCKKESYRWEYKLIKVVTLAMYTMIAVTIIVLCSR RGLSRGRMTSFWRQNAQHNLNIETIIMNSHSLTPKRYTYSEIKKMTNSFVDKLGQGGFGGVYKGELPDGRPVAVKVLKNSKGDGEEFVNEVVSISRTSHV NIVTLFGFCFERTKRALIYEYMPNGSLDKFIYRQTSLHGNHNLQWEKLYEIAVGIGRGLEYLHRGCNTRIVHFDIKPHNILLDTDFCPKISDFGLAKLCK REESMVSMTGARGTAGYIAPEVFCKNFGGVSYKSDVYSYGMMVLEMVGGKRNIDIGESQSSEIFLPNCMYESEEVSSLHGVITDETEETIKKMVTVGLWC VQTNPLDRPSMTKVVEMLEGSLQFLQTPPKPFLYSPTTSLETNLTASTSRACALSQNVSGMAAIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66910			Protein kinase superfamily pro...		Potri.017G116900 [exp]	0	1
AT4G24015			RING/U-box superfamily protein...		Potri.001G088400 [exp]	5.09	0.6941
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.002G185000 [exp]	13.49	0.7147	POL.2
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.004G230300 [exp]	13.78	0.7706	Pt-STI.4
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117700 [exp]	14.24	0.6907	CYP72D2-1
AT4G32630			ArfGap/RecO-like zinc finger d...		Potri.018G035000 [exp]	18.89	0.7071
					Potri.001G207600 [exp]	20.12	0.7344
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.015G099600 [exp]	26.07	0.7427
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.005G252800 [exp]	28.08	0.7558
AT2G33205			Serinc-domain containing serin...		Potri.003G174200 [exp]	32.90	0.7070
AT3G55550			Concanavalin A-like lectin pro...		Potri.016G101000 [exp]	60.00	0.6370	Pt-LECRK7.1

Compare expression of checked genes

Potri.017G116900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.