Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66940 69 / 4e-13 protein kinase-related (.1.2.3) AT1G66880 66 / 6e-12 Protein kinase superfamily protein (.1) AT1G67025 62 / 2e-11 unknown protein AT1G67000 63 / 6e-11 Protein kinase superfamily protein (.1) AT5G38210 62 / 9e-11 Protein kinase family protein (.1) AT1G66920 61 / 2e-10 Protein kinase superfamily protein (.1.2) AT5G38260 59 / 8e-10 Protein kinase superfamily protein (.1) AT1G18390 52 / 3e-07 Protein kinase superfamily protein (.1.2) AT1G66910 50 / 1e-06 Protein kinase superfamily protein (.1) AT5G38240 47 / 6e-06 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117010 [exp] 476 / 3e-166 AT5G38260 398 / 3e-130 Protein kinase superfamily protein (.1) Potri.004G097100 [exp] 243 / 1e-75 AT5G38210 525 / 4e-179 Protein kinase family protein (.1) Potri.004G097000 [exp] 234 / 1e-72 AT5G38260 410 / 5e-135 Protein kinase superfamily protein (.1) Potri.017G118100 [exp] 90 / 7e-20 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096550 [exp] 87 / 4e-19 AT5G38210 594 / 0.0 Protein kinase family protein (.1) Potri.017G117065 [exp] 87 / 7e-19 AT1G66920 449 / 3e-150 Protein kinase superfamily protein (.1.2) Potri.017G117400 [exp] 82 / 2e-18 AT1G66930 105 / 2e-25 Protein kinase superfamily protein (.1) Potri.015G044750 [exp] 85 / 3e-18 AT1G18390 532 / 0.0 Protein kinase superfamily protein (.1.2) Potri.017G117340 [exp] 85 / 3e-18 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028494 [exp] 137 / 3e-36 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10039725 [exp] 82 / 3e-17 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10009151 [exp] 81 / 6e-17 AT1G66880 129 / 2e-32 Protein kinase superfamily protein (.1) Lus10009150 [exp] 69 / 6e-13 AT1G66880 365 / 1e-120 Protein kinase superfamily protein (.1) Lus10007934 [exp] 46 / 3e-05 AT5G38260 273 / 3e-83 Protein kinase superfamily protein (.1) Lus10013473 [exp] 43 / 5e-05 ND / Lus10016737 [exp] 44 / 0.0001 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2) Lus10027117 [exp] 42 / 0.0004 AT1G18390 47 / 8e-06 Protein kinase superfamily protein (.1.2) Lus10027119 [exp] 41 / 0.0007 AT5G38260 210 / 3e-60 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G117175.1 pacid=42812936 polypeptide=Potri.017G117175.1.p locus=Potri.017G117175 ID=Potri.017G117175.1.v4.1 annot-version=v4.1 ATGCACACCCTCACCACCACCTCCTCTTTCCTTCTCACCCTCTTTCTCTCCCTCCACTTAACGACATCGCTTCCTTCCAATGACACTGGTAATCTTTCAA ACTGCAATCAAAACTTCTCCTGTGGTATCCTCACAAACGTCACCTACCCTTTCACTGGTGGCCTACGTCCATCCCACTGCGGCCCACCGGAGTTCGGCCT CACATGTGAGGATGAATCAGTCACCATCCTAAAAGCTAACTCACTGAGTTACCGAGTCAATATTCTTGACCAGACCAGCCAAACCTTAAGACTCTCACGT TCAGACCTCTACGACGACGGAAAATGTACCCGCCAATTCACTAACACCACTCTGGATGACAGAATCTTCAGTCTTGGTTCCAGCAATGAACTTTTTTTGT TTTATGGTTGCAAGAAGATTAACGACTCTGGCATGGGATCAGATCCGCTGCTAAAAATCTCTAGGTTCTCTTGTGAAAATGATGGAGTTACAGAAGAAGG GTTTTTCTCGATTGTTTACCCTTACGGTACTGAATATTCTTTTCCGAATACGTTTGAGTGTCAAACTAATATTCGAGTGCCAATTCCTGAGACTCGGGCA CAACAGCTTCTTGAGAACGGGTCATTAGTTGGTGAGGTTTTGAAAGAAGGGTTTGATGTCAGTTATGGTAATCCTTACAGTGCTAATTGTACAGAGTGTT ACAAGAAGCACCCTGGTGAGTATTGTGGATTTGATACACAGTTGGGTAAACCTATTTGCATTTGTCATGATCAGCTCTGTCCTGGTAAGCAAAAATCTTT AGTTTTCATGAGTTTGTTTGTGCAACGATTATTAGGTTATGCATGA
AA sequence Show only first row Show all	>Potri.017G117175.1 pacid=42812936 polypeptide=Potri.017G117175.1.p locus=Potri.017G117175 ID=Potri.017G117175.1.v4.1 annot-version=v4.1 MHTLTTTSSFLLTLFLSLHLTTSLPSNDTGNLSNCNQNFSCGILTNVTYPFTGGLRPSHCGPPEFGLTCEDESVTILKANSLSYRVNILDQTSQTLRLSR SDLYDDGKCTRQFTNTTLDDRIFSLGSSNELFLFYGCKKINDSGMGSDPLLKISRFSCENDGVTEEGFFSIVYPYGTEYSFPNTFECQTNIRVPIPETRA QQLLENGSLVGEVLKEGFDVSYGNPYSANCTECYKKHPGEYCGFDTQLGKPICICHDQLCPGKQKSLVFMSLFVQRLLGYA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66940			protein kinase-related (.1.2.3...		Potri.017G117175 [exp]	0	1
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	7.93	0.8582
AT5G25930			Protein kinase family protein ...		Potri.018G088200 [exp]	15.36	0.8534
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	15.87	0.7942
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	17.60	0.8627
AT1G68940			Armadillo/beta-catenin-like re...		Potri.001G069501 [exp]	37.14	0.8327
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117900 [exp]	37.97	0.8316
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.012G010445 [exp]	49.49	0.8122
AT1G50180			NB-ARC domain-containing disea...		Potri.018G138500 [exp]	50.99	0.7151
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	51.21	0.7800
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G007600 [exp]	60.00	0.8062

Compare expression of checked genes

Potri.017G117175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.