Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38260 456 / 2e-152 Protein kinase superfamily protein (.1) AT1G67000 445 / 4e-145 Protein kinase superfamily protein (.1) AT1G66910 434 / 6e-144 Protein kinase superfamily protein (.1) AT1G66930 429 / 1e-141 Protein kinase superfamily protein (.1) AT1G66920 403 / 2e-132 Protein kinase superfamily protein (.1.2) AT4G18250 389 / 3e-124 receptor serine/threonine kinase, putative (.1) AT5G38280 383 / 5e-124 PR5K PR5-like receptor kinase (.1) AT1G70250 382 / 2e-122 receptor serine/threonine kinase, putative (.1) AT5G39020 348 / 6e-109 Malectin/receptor-like protein kinase family protein (.1) AT5G38250 341 / 6e-109 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117120 [exp] 873 / 0 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.017G117285 [exp] 742 / 0 AT1G66920 439 / 2e-146 Protein kinase superfamily protein (.1.2) Potri.017G117010 [exp] 741 / 0 AT5G38260 398 / 3e-130 Protein kinase superfamily protein (.1) Potri.017G117065 [exp] 707 / 0 AT1G66920 449 / 3e-150 Protein kinase superfamily protein (.1.2) Potri.017G116900 [exp] 649 / 0 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.017G116955 [exp] 619 / 0 AT1G66920 389 / 5e-128 Protein kinase superfamily protein (.1.2) Potri.017G118100 [exp] 597 / 0 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G097000 [exp] 571 / 0 AT5G38260 410 / 5e-135 Protein kinase superfamily protein (.1) Potri.004G096900 [exp] 481 / 3e-161 AT5G38210 557 / 0.0 Protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039725 [exp] 353 / 3e-112 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10025553 [exp] 334 / 3e-105 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10026761 [exp] 327 / 5e-104 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1) Lus10025547 [exp] 322 / 1e-101 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10014923 [exp] 321 / 4e-101 AT1G67000 335 / 2e-107 Protein kinase superfamily protein (.1) Lus10014924 [exp] 317 / 8e-99 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10025545 [exp] 294 / 6e-94 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10022359 [exp] 297 / 8e-92 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 299 / 3e-91 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025492 [exp] 297 / 5e-91 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding CL0016 [poplar] [flax] PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G117340.1 pacid=42813378 polypeptide=Potri.017G117340.1.p locus=Potri.017G117340 ID=Potri.017G117340.1.v4.1 annot-version=v4.1 ATGCAACACCATCTCTTTCCTACCAAGTCTTGGTTCATCATGTTCCTAACAATAACCTTTGTCCATGCTCCATCATCTGCCTCTGCCAATGATGATGAGC GATATGTAAGCTGCAGCAACTCGTTAGATTGTGGAGATATTAAGGGTGTTGGTTATCCTTTCTGGGGATCCAATAGGCCTGATTACTGTGGCTATCCGGA GTTGAAGCTCAACTGCAGTGACCAAGATCTGGAGATCACAATCAAGAAATTGACTTACAAAGTTCTTGGCATCAATAACCAGTCACGGACTCTCAGTGTT GCTCGAACAGATTATGCAGAAAACATCTGTCCAATATTCATTCTCAACACCACTTGGATACCCAATCTCTTGAACTACACATCCGATGATCAGAACATAA CAATCTACTATGGTTGCCCCACTCAAGGTGCACCAACTTCAACGGTTTTACCTCAGTTTCCCTGCGAAATAAACGCCACTCAGATGACGGGCTACTTTAC AGCATTTGCCAACTTGTCGGTTCTTGGAAGCTCTGCTTCTAGCTTGATCAGTTACCTGGCATCGTGCAAAGATAGCATTATAGTTCCACTACGTGAATCA GCTTTTCAGCAAATTTTAAGTACTCCAACTGCAGCACAGCTGCTGGGAAGTCTAAATCAAGGTTTTGGTTTGGAGTGGAATGCATCTAATAGCTTATGTG ATACATGCCAACTTTCTGGTGGTCAGTGTGGGCACAACCAGACTACTACAGCATTTACTTGTTATTGCAAGGATCAACCTCAACAATTTTCTTGCCAACA ATCTCCAACTAATGATCAATCCTCAAGATCTACTCGGAGTAGGCGACTATGGATTGCTTTAGGCACATCAGCAGCTGTGGCAGCGATGGTGACTTTTTCC ATAATTACAATATATCTCACTAGAAGAGAAGGTTCTTTTGGTGCTGTCATAGCAATGACCTTCAGGCTGAAGAAATCGCAGCATGTTGGTAGGGTTAAAA CATTTATGATGGACTATCATTCTCTTATTCCAAAGCGTTATTCGTATTCAGAGATCAAGAAAATGACCAACTCATTCGTCTATACACTAGGCCAGGGAGG ATTTGGTAATGTATACAGAGGAAAGTTACCAGATGACGGTCGTCTTGTAGCTGTAAAAGTCCTAAAAGAATCCAAAGGTGATGGAGAAGAGTTCATGAAT GAAGTTGCAAGCATCAGTAGAACTTCCCACGTGAATGTAGTTAACCTTTTGGGCTTCTGCTACGAGAGGAATAAAAGAGCTTTGATTTATGAATTCATGC CCAATGGATCTTTAGATAGCTTCCTATCTGATAAAGGATCCCCACATACAACCTGTCGTTTAGAATGGAAAAAATTATATGAAATTGCAGTTAGTATTGC TAGAGGTCTGGAGTACTTGCATAGAGGGTGTAACACTCGGATTGTGCATTTTGACATAAAGCCTCACAACATTCTTCTTGATGAAGACTTTTGTCCAAAG ATCTCAGATTTTGGTCTCGCGAAGCTATGCCAGAGCAAAGTAAGTAAGATTTCGATGATAGGTGCCAGAGGAACTGTTGGTTACATAGCGCCTGAAGTAT TCTGCAGAAATTTTGGAGGAGTAACTTACAAGTCTGATGTGTATAGTTATGGAATGATGGTTCTTGAAATGGTCGGACAAAGTAAAGATTTTGATATGGG ATCGGTGGAAACCAACGAGTTGTATTTCCCGGATTGGTTTTATATGTATCTTGATCCAGGAGAGATTTCAACATTTCATGGAGGTACAACGGAGGAGGAA GAAGAGATTGTTAAAAAGATGATTTTAGTGGGTTTGTGGTGCATCCAAACCATGCCGTCACATAGACCATCAATGACAAAGGTTGTAGAGATGTTTGAAG GCAGTCTTCAGTCTTTGCAAATTCCACCGAGACCTTCCCTTTCCTCTCCTAGAAGGTCCGCTCAAGATCACTCTTCCAATGTATCATCACTGCCTTGCGT GTCGTCCAGGGGGGTGGGGTAA
AA sequence Show only first row Show all	>Potri.017G117340.1 pacid=42813378 polypeptide=Potri.017G117340.1.p locus=Potri.017G117340 ID=Potri.017G117340.1.v4.1 annot-version=v4.1 MQHHLFPTKSWFIMFLTITFVHAPSSASANDDERYVSCSNSLDCGDIKGVGYPFWGSNRPDYCGYPELKLNCSDQDLEITIKKLTYKVLGINNQSRTLSV ARTDYAENICPIFILNTTWIPNLLNYTSDDQNITIYYGCPTQGAPTSTVLPQFPCEINATQMTGYFTAFANLSVLGSSASSLISYLASCKDSIIVPLRES AFQQILSTPTAAQLLGSLNQGFGLEWNASNSLCDTCQLSGGQCGHNQTTTAFTCYCKDQPQQFSCQQSPTNDQSSRSTRSRRLWIALGTSAAVAAMVTFS IITIYLTRREGSFGAVIAMTFRLKKSQHVGRVKTFMMDYHSLIPKRYSYSEIKKMTNSFVYTLGQGGFGNVYRGKLPDDGRLVAVKVLKESKGDGEEFMN EVASISRTSHVNVVNLLGFCYERNKRALIYEFMPNGSLDSFLSDKGSPHTTCRLEWKKLYEIAVSIARGLEYLHRGCNTRIVHFDIKPHNILLDEDFCPK ISDFGLAKLCQSKVSKISMIGARGTVGYIAPEVFCRNFGGVTYKSDVYSYGMMVLEMVGQSKDFDMGSVETNELYFPDWFYMYLDPGEISTFHGGTTEEE EEIVKKMILVGLWCIQTMPSHRPSMTKVVEMFEGSLQSLQIPPRPSLSSPRRSAQDHSSNVSSLPCVSSRGVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	0	1
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	3.00	0.9239
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	3.46	0.9139
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	3.87	0.9071
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	4.89	0.9065
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187400 [exp]	5.65	0.9084
AT3G53820	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.016G101300 [exp]	6.32	0.9000
AT1G24440			RING/U-box superfamily protein...		Potri.015G089800 [exp]	7.41	0.8963
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.005G093200 [exp]	8.24	0.8857	NCPGS.4
AT2G24720		ATGLR2.2	glutamate receptor 2.2 (.1)		Potri.018G096300 [exp]	8.36	0.8976
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016500 [exp]	8.48	0.8995

Compare expression of checked genes

Potri.017G117340 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.