Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66930 105 / 2e-25 Protein kinase superfamily protein (.1) AT5G38260 99 / 2e-23 Protein kinase superfamily protein (.1) AT1G66910 96 / 4e-22 Protein kinase superfamily protein (.1) AT1G67000 96 / 4e-22 Protein kinase superfamily protein (.1) AT1G66880 88 / 2e-19 Protein kinase superfamily protein (.1) AT5G38210 71 / 9e-14 Protein kinase family protein (.1) AT1G66920 71 / 1e-13 Protein kinase superfamily protein (.1.2) AT1G66940 66 / 3e-12 protein kinase-related (.1.2.3) AT5G38250 54 / 3e-08 Protein kinase family protein (.1) AT5G38240 51 / 3e-07 Protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G117120 [exp] 342 / 2e-114 AT5G38260 430 / 2e-142 Protein kinase superfamily protein (.1) Potri.017G118250 [exp] 340 / 4e-113 AT5G38210 542 / 0.0 Protein kinase family protein (.1) Potri.017G117340 [exp] 287 / 8e-93 AT5G38260 456 / 9e-153 Protein kinase superfamily protein (.1) Potri.017G118100 [exp] 275 / 4e-88 AT5G38210 575 / 0.0 Protein kinase family protein (.1) Potri.004G096900 [exp] 273 / 5e-87 AT5G38210 557 / 0.0 Protein kinase family protein (.1) Potri.004G096675 [exp] 240 / 1e-79 AT5G38260 99 / 1e-23 Protein kinase superfamily protein (.1) Potri.017G116900 [exp] 196 / 2e-58 AT1G66910 477 / 2e-160 Protein kinase superfamily protein (.1) Potri.017G116955 [exp] 104 / 3e-25 AT1G66920 389 / 5e-128 Protein kinase superfamily protein (.1.2) Potri.017G117285 [exp] 102 / 2e-24 AT1G66920 439 / 2e-146 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039725 [exp] 154 / 7e-43 AT4G03230 445 / 5e-144 S-locus lectin protein kinase family protein (.1) Lus10028494 [exp] 153 / 3e-42 AT1G66880 480 / 2e-152 Protein kinase superfamily protein (.1) Lus10009151 [exp] 141 / 2e-39 AT1G66880 129 / 2e-32 Protein kinase superfamily protein (.1) Lus10016737 [exp] 47 / 1e-05 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding PF14380 [poplar] [flax] WAK_assoc Wall-associated receptor kinase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.017G117400.2 pacid=42814640 polypeptide=Potri.017G117400.2.p locus=Potri.017G117400 ID=Potri.017G117400.2.v4.1 annot-version=v4.1 ATGCAATGCCATCTCTTTCCTACCAATTCTTGGTTCATCATATTCCTTATAATAATCTGTGTCCATGCTCCATCATCTGCTTTTTCGGATGATGATGAGC GATATCTGAGCTGCGTGAAGTCATTTGATTGCGGAAATATTAAGGGTGTTGGTTATCCTTTCTCGGGATCCGATAGGCCTGATTACTGTGGCTATCCCGG GTTTGAGCTCGGTTGCAGCAACCAAGATCCGGAGATCACAATCATGCAATTGAGTTACAAACTCCTTGGCATCAATAACCAGTCGCGGACTCTCAATGTT TCTAGAACAGATTACACAGAAAATCTTTGCCCTACTCTCCTTTCCAACACCTCTTTGAATCCAAATCTCTTGAGTTCCACTTCAGATCATGCTGAGGTAA CACTGTACTATGGTTGCCCTAGTCCAAGCCCAGCAGGGTTTTCAGCTCAGTTTACTTGCAACGTTAACGACAGTACTGGTATGATGGGATACTTTATAAC AGTCAACCTCTCTGTCCTCAGTATGACTGCTCCCAGCTTAATCAGCTACCTGACAGCATGCAACAATAGTGTTAAAGTTCCTGCCCATCTATCAGCTATT ATGCCAATTCTACCCAATCCAACTGTAGCACAGTTGCTTGAAGCTATTTATCAAGGTTTTGAGTTGGAGTGTAGTGCAAATGATTCATTATGTGATACAT GCAAATCTTCCGGTGGTCAGTGTGGGTACAACCAGACCACTACAGCACAGTTAGTTGTTAATGTTTCCGTTTAA
AA sequence Show only first row Show all	>Potri.017G117400.2 pacid=42814640 polypeptide=Potri.017G117400.2.p locus=Potri.017G117400 ID=Potri.017G117400.2.v4.1 annot-version=v4.1 MQCHLFPTNSWFIIFLIIICVHAPSSAFSDDDERYLSCVKSFDCGNIKGVGYPFSGSDRPDYCGYPGFELGCSNQDPEITIMQLSYKLLGINNQSRTLNV SRTDYTENLCPTLLSNTSLNPNLLSSTSDHAEVTLYYGCPSPSPAGFSAQFTCNVNDSTGMMGYFITVNLSVLSMTAPSLISYLTACNNSVKVPAHLSAI MPILPNPTVAQLLEAIYQGFELECSANDSLCDTCKSSGGQCGYNQTTTAQLVVNVSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66930			Protein kinase superfamily pro...		Potri.017G117400 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335300 [exp]	1.41	0.9156	Pt-LHT1.2
AT1G68710			ATPase E1-E2 type family prote...		Potri.012G058000 [exp]	1.73	0.8853	Pt-ALA9.2
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	6.32	0.8897
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.001G349600 [exp]	7.07	0.8677
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	7.74	0.8734
AT3G24090			glutamine-fructose-6-phosphate...		Potri.019G054500 [exp]	8.83	0.8669
AT1G44350		ILL6	IAA-leucine resistant (ILR)-li...		Potri.002G082400 [exp]	9.00	0.8605
AT4G15120			VQ motif-containing protein (....		Potri.016G017900 [exp]	14.42	0.8274
AT1G76360			Protein kinase superfamily pro...		Potri.005G251900 [exp]	14.49	0.8637
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	14.83	0.8577	Pt-GT4.1

Compare expression of checked genes

Potri.017G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.