Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38220 468 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 393 / 5e-138 alpha/beta-Hydrolases superfamily protein (.1) AT4G24760 352 / 1e-120 alpha/beta-Hydrolases superfamily protein (.1) AT3G30380 350 / 1e-119 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14390 345 / 5e-118 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 340 / 6e-116 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 311 / 1e-105 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 299 / 7e-101 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 288 / 2e-95 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G32190 273 / 5e-89 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097300 [exp] 546 / 0 AT5G38220 469 / 3e-167 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G340000 [exp] 366 / 7e-126 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 359 / 3e-123 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G087100 [exp] 353 / 4e-121 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G112300 [exp] 353 / 1e-120 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G136900 [exp] 350 / 2e-119 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 347 / 2e-118 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G112600 [exp] 337 / 2e-114 AT3G30380 458 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 312 / 4e-106 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017617 [exp] 445 / 4e-157 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 431 / 1e-151 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10028497 [exp] 417 / 1e-146 AT5G38220 466 / 2e-166 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10031953 [exp] 345 / 9e-118 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 343 / 8e-117 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 341 / 1e-115 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10042075 [exp] 338 / 8e-115 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10040038 [exp] 326 / 4e-111 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10019604 [exp] 319 / 2e-108 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10018081 [exp] 337 / 5e-108 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.017G117633.1 pacid=42814124 polypeptide=Potri.017G117633.1.p locus=Potri.017G117633 ID=Potri.017G117633.1.v4.1 annot-version=v4.1 ATGGGCGGAGTCACTTCAACAATTGCCGCGAAGTTCGCTTTCTTCCCACCAAACCCTGCTTCTTATACGGTGGTAACTGATGACTCTTCCTCCGCCGTGT CTGGCGGCTCCACCACAAGGCTGTATATACCCGAGGTGCCGAGGAAGGATGACGTGGATGTGCTGAAGTTGAGGACTCGGCGTGGAAATGAAATCGTGGC TGTTCATATTAAACATCCAAGAGCTTCAGCTACTTTGTTGTATTCTCATGGAAATGCTGCTGATTTGGGTCAAATGTTTGAGCTTTTTGTTGAATTGAGT AATCGCCTTCGCATTAATCTTATGGGATATGATTACTCTGGCTATGGGCAATCAAGCGGAAAGCCAACTGAATGTAACACATATGCGGACATAGACGCGG CATATAAATGCCTCAAGGAGCAGTATGGGGTTAAAGATGATCAATTAATATTGTATGGTCAGTCTGTTGGTAGTGGTCCCACAGTTGATCTCGCTTCGCG TTTACCAAACTTGAGAGGTGTGGTTCTGCATAGCCCAATATTGTCTGGGATGAGGGTATTGTACCCAGTCAAAAGGACTTACTGGTTTGACATTTACAAG AACATTGACAAAATTGGTATGGTGAACTGTCGTGTTCTCATAATTCATGGAACATCAGATGAAGTGGTTGACTACTCTCACGGGAAACAACTTTGGGAGC TTTGCAAAGAGAAATATGAACCATTGTGGATCAATGGAGGTGGGCATTGCAATCTTGAGCTTTACCCAGAATTTATCAAACATCTGAAGAAGTTTGTTTT GACCATAGGCAAATCAAAAACAGCTACAAATGGTCCTAAAACAACAGCAGAGTCTGAAAATCAGAACAAACCATCTGAGAGTGCAAGTTCAGACACTTTT GAACTGGGTGACCTTCCTGAAATCTCTAGAAATAGCTTAGATAGTAGGCTTGAGAAGTCTAAGAAGCCAAATAAGCCTGAAAAGTCTCGGATGAGCACTG ACCGTGTTGATAGATTTAGAAGAAGAAAAGGCTTGGTCTGGTGA
AA sequence Show only first row Show all	>Potri.017G117633.1 pacid=42814124 polypeptide=Potri.017G117633.1.p locus=Potri.017G117633 ID=Potri.017G117633.1.v4.1 annot-version=v4.1 MGGVTSTIAAKFAFFPPNPASYTVVTDDSSSAVSGGSTTRLYIPEVPRKDDVDVLKLRTRRGNEIVAVHIKHPRASATLLYSHGNAADLGQMFELFVELS NRLRINLMGYDYSGYGQSSGKPTECNTYADIDAAYKCLKEQYGVKDDQLILYGQSVGSGPTVDLASRLPNLRGVVLHSPILSGMRVLYPVKRTYWFDIYK NIDKIGMVNCRVLIIHGTSDEVVDYSHGKQLWELCKEKYEPLWINGGGHCNLELYPEFIKHLKKFVLTIGKSKTATNGPKTTAESENQNKPSESASSDTF ELGDLPEISRNSLDSRLEKSKKPNKPEKSRMSTDRVDRFRRRKGLVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38220			alpha/beta-Hydrolases superfam...		Potri.017G117633 [exp]	0	1
AT5G54010			UDP-Glycosyltransferase superf...		Potri.011G061000 [exp]	11.83	0.6826
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.015G086400 [exp]	13.41	0.6483
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.001G189700 [exp]	20.49	0.6405
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.013G161500 [exp]	22.64	0.6291
					Potri.014G094600 [exp]	26.26	0.6071
AT2G41540		GPDHC1	6-phosphogluconate dehydrogena...		Potri.016G043400 [exp]	41.73	0.6002
AT1G55210			Disease resistance-responsive ...		Potri.003G216300 [exp]	74.21	0.5787
AT3G50830		ATCOR413-PM2, C...	cold-regulated 413-plasma memb...		Potri.009G109800 [exp]	74.31	0.6152
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.007G009100 [exp]	94.42	0.5881	Pt-MDH.1
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.010G095200 [exp]	94.91	0.5908	Pt-CYCD1.1

Compare expression of checked genes

Potri.017G117633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.