Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16200 73 / 7e-17 50S ribosomal protein-related (.1) AT1G66890 69 / 2e-15 unknown protein AT1G68430 63 / 3e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G097200 [exp] 136 / 7e-42 AT1G66890 / unknown protein Potri.010G121300 [exp] 74 / 4e-17 AT1G68430 79 / 5e-19 unknown protein Potri.008G123800 [exp] 61 / 6e-13 AT1G68430 54 / 2e-10 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028496 [exp] 86 / 6e-22 AT5G16200 84 / 9e-21 50S ribosomal protein-related (.1) Lus10034103 [exp] 74 / 2e-17 AT1G68430 68 / 6e-15 unknown protein Lus10003042 [exp] 69 / 2e-15 AT1G68430 66 / 3e-14 unknown protein Lus10009148 [exp] 69 / 5e-15 AT5G16200 81 / 2e-19 50S ribosomal protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.017G117866.1 pacid=42813868 polypeptide=Potri.017G117866.1.p locus=Potri.017G117866 ID=Potri.017G117866.1.v4.1 annot-version=v4.1 ATGGCGACGCTGCAAAAATTCAAGCTATTAGCCACGCAATGTGCAGTAGCTACACCAACACAAAGTCCAACGACAAGTCCGGTTTTTCACATCCGCCGCA GGAGGAAGACTCTTCGGATGCTACTCTCGAAGAAATCCGATGCTCGCTGGAGGGCTCCCCGGCGAGAAGATCAATCGGAGGTGGAGGAAGATCCGTTGCC CGAGAAGGGGGTGAGGAGGAAATTGAAGGATTTGTTTGTGTCTTCCCCGCCCTTTGAGCAGGAGAGGAGGGGTGGCGAGCGTGGTGGTGGTGAGGAGGTG GGGTTGATTAGTGGCGGCGGAGCCGCGTTGAGAAGAGGTGGCGGTGTCGGCGCGTTGAGACCGGTGGCGGCGACGTTTAGATATAGATTGTTAAGGAGAG CTTGGAGACCTGTATTAGTTACTATCCCCGAATAA
AA sequence Show only first row Show all	>Potri.017G117866.1 pacid=42813868 polypeptide=Potri.017G117866.1.p locus=Potri.017G117866 ID=Potri.017G117866.1.v4.1 annot-version=v4.1 MATLQKFKLLATQCAVATPTQSPTTSPVFHIRRRRKTLRMLLSKKSDARWRAPRREDQSEVEEDPLPEKGVRRKLKDLFVSSPPFEQERRGGERGGGEEV GLISGGGAALRRGGGVGALRPVAATFRYRLLRRAWRPVLVTIPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16200			50S ribosomal protein-related ...		Potri.017G117866 [exp]	0	1
AT2G29690		ATHANSYNAB, ASA...	anthranilate synthase 2 (.1)		Potri.001G250300 [exp]	1.73	0.7433
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012700 [exp]	4.89	0.7311
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154500 [exp]	5.91	0.7244
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.002G224800 [exp]	7.34	0.7258	Pt-SMT3.1
AT2G01660		PDLP6	plasmodesmata-located protein ...		Potri.008G133500 [exp]	7.48	0.6943
AT5G03970			F-box associated ubiquitinatio...		Potri.005G124500 [exp]	11.91	0.7624
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074600 [exp]	20.12	0.7083	EDS1.1
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.002G123600 [exp]	25.25	0.6691
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.002G123700 [exp]	25.88	0.7074
AT1G72930		TIR	toll/interleukin-1 receptor-li...		Potri.005G004000 [exp]	26.15	0.6836

Compare expression of checked genes

Potri.017G117866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.